Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,116,789 – 4,117,038 |
Length | 249 |
Max. P | 0.956719 |
Location | 4,116,789 – 4,116,897 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 90.62 |
Mean single sequence MFE | -33.98 |
Consensus MFE | -29.26 |
Energy contribution | -29.52 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.04 |
Mean z-score | -1.71 |
Structure conservation index | 0.86 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4116789 108 - 20766785 CGCUUCUGGCUGCGAGCAGCUGCGUCAUCGGGCUGCUCAAUUGAAAGCUAUUGUUUAUUGCAUUUGUCACCAGGAAGAUGAAAGAUAUACACAUGCGGGCAGCGCCAA ........(((((((((((((.((....))))))))))........((...(((.((((.(((((..(....)..)))))...)))).)))...))..)))))..... ( -34.90) >DroSim_CAF1 29863 108 - 1 CGCUUCUGGCUGCGAGCAGCUGCGUCAUCGGGCUGCUCAAUUGAAAGCUAUUGUUUAUUGCAUUUGUCACCAGGAAGAUGAGAGAUAUACAUAUGCGGGCAGCGCCAA ........(((((((((((((.((....))))))))))........((...(((.((((.(((((..(....)..)))))...)))).)))...))..)))))..... ( -35.60) >DroEre_CAF1 7341 100 - 1 --AUUCUGGCUGCGAGCAGCUGCGUCAUCGGGCUGCUCAAUUAAAAGCUAUUGUUUAUUGCAUUUGUCACCAGGAAAAUGAGAGAUA------UGCGGGCUGCGCCAA --....((((.((((((((((.((....)))))))))).......((((...((.((((.(((((..(....)..)))))...))))------.)).)))))))))). ( -33.80) >DroYak_CAF1 13901 100 - 1 --AUUCUGGCUGCGAGCAGCUGCGUCAUCGGGCAGCUCAAUUAAAAGCUAUUGUUUAUUGCAUUUGUCACCAGGAAAAUGGGAGAUA------UGCGGGCAGCACCAA --......(((((((((.(((.((....))))).))))......((((....)))).((((((.(.((.(((......))))).).)------))))))))))..... ( -31.60) >consensus __AUUCUGGCUGCGAGCAGCUGCGUCAUCGGGCUGCUCAAUUAAAAGCUAUUGUUUAUUGCAUUUGUCACCAGGAAAAUGAGAGAUA______UGCGGGCAGCGCCAA ........(((((((((((((.((....))))))))))........((.......((((.(((((..(....)..)))))...)))).......))..)))))..... (-29.26 = -29.52 + 0.25)
Location | 4,116,897 – 4,117,009 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.30 |
Mean single sequence MFE | -33.17 |
Consensus MFE | -22.03 |
Energy contribution | -23.03 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.38 |
Structure conservation index | 0.66 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734648 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4116897 112 + 20766785 AUUCUGGUCUAGACUGGCAUUGCUUGACCCACGGAUUCCCGACUUUGAUAUGGACCGCACUGCAAGUGUGGCUAAUCGAAGAAGUCGGCGGUAUGU--------GCAUAUGUGGCGAAUU ...(..((....))..)..(((((.....((((.((..(((((((((((.(((.((((((.....))))))))))))...))))))))..)).)))--------).......)))))... ( -34.70) >DroSim_CAF1 29971 120 + 1 ACUCUGGUCUAGACUGGCAUUGCUUGACCCACGGAUUCCCGACUUUGAUAUGGGCCGCACUGCAAGUGUGGCUAAUCGAAGAAGUCGACAGUAUGUAUGUAUAUCCAUAUGUGGCGAAUU ...(..((....))..)..(((((((((...(((....))).(((((((...((((((((.....)))))))).)))))))..)))))...((((((((......))))))))))))... ( -37.80) >DroYak_CAF1 14001 85 + 1 ----UGGUCUAGACUGGCAUUGCUUGACCAACGGAUUCUGCACUUUGAUAUGGGCCGCACUGCAAAUGUGGCUACUCGAAGAAUC-------------------------------CAUU ----(((((.((.(.......))).)))))..(((((((.....((((....(((((((.......)))))))..))))))))))-------------------------------)... ( -27.00) >consensus A_UCUGGUCUAGACUGGCAUUGCUUGACCCACGGAUUCCCGACUUUGAUAUGGGCCGCACUGCAAGUGUGGCUAAUCGAAGAAGUCG_C_GUAUGU_________CAUAUGUGGCGAAUU .....((((.((.(.......))).)))).............(((((((...((((((((.....)))))))).)))))))....................................... (-22.03 = -23.03 + 1.00)
Location | 4,116,937 – 4,117,038 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.73 |
Mean single sequence MFE | -30.47 |
Consensus MFE | -23.02 |
Energy contribution | -23.36 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.12 |
Mean z-score | -1.67 |
Structure conservation index | 0.76 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956719 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4116937 101 + 20766785 GACUUUGAUAUGGACCGCACUGCAAGUGUGGCUAAUCGAAGAAGUCGGCGGUAUGU--------GCAUAUGUGGCGAAUUAUGCAAUCGACAUCAGAAUUUGAACGAAU----------- ..(((((((.(((.((((((.....))))))))))))))))..(((((..((((((--------((.......)))...)))))..)))))..................----------- ( -29.50) >DroSim_CAF1 30011 110 + 1 GACUUUGAUAUGGGCCGCACUGCAAGUGUGGCUAAUCGAAGAAGUCGACAGUAUGUAUGUAUAUCCAUAUGUGGCGAAUUAUGCAAUCGACAUCAGAAGAUGAACGAAUC---------- ..(((((((...((((((((.....)))))))).)))))))..(((((...((((((((......))))))))(((.....)))..))))).(((.....))).......---------- ( -33.30) >DroEre_CAF1 7454 104 + 1 GACUUUGAUAUGAACCGCACUGCAAGUGUGGCUAAUCGAAGAAGUUGGCAGCAUG--------------UGUGGCGUAUUAUGCAGCC--CAUCAAAAGAUGACCUAAUCCGCAUGGCAG ..(((((((.....((((((.....))))))...)))))))......((..((((--------------((.(((((.....)).)))--((((....))))........)))))))).. ( -28.60) >consensus GACUUUGAUAUGGACCGCACUGCAAGUGUGGCUAAUCGAAGAAGUCGGCAGUAUGU_________CAUAUGUGGCGAAUUAUGCAAUCGACAUCAGAAGAUGAACGAAUC__________ ..(((((((.(((.((((((.....))))))))))))))))..(((((..(((((........................)))))..)))))............................. (-23.02 = -23.36 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:05 2006