Locus 97

Sequence ID 2R_DroMel_CAF1
Location 1,346,575 – 1,346,695
Length 120
Max. P 0.605475
window207

overview

Window 7

Location 1,346,575 – 1,346,695
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.87
Mean single sequence MFE -37.42
Consensus MFE -30.01
Energy contribution -30.02
Covariance contribution 0.00
Combinations/Pair 1.12
Mean z-score -1.52
Structure conservation index 0.80
SVM decision value 0.15
SVM RNA-class probability 0.605475
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1346575 120 + 20766785
GAAUUACCGUUUAGCCAGCAGGAAGUCGUCCUGUGUCAGCUGUGUCAGGAGGCUUAACCCGCAAAGGGGUCUCGGCCAAUUCGACUCUGACGGCGGCUAUAAAAUGCCACUUAAAUCCCA
........((((((((.((((((.....))))))(((((....(((((..((((..((((......))))...))))..)).))).))))))))(((........)))...))))).... ( -39.70)
>DroSec_CAF1 64860 117 + 1
GAAUUACCGUUUAGCCAGCAGGAAGUCGUCCUGUGUCAGCAA---AAGGAGGCUUAACCCGCAAAGGGGUCUCGGCCAAUUCGACUCUGACGGCGGCUAUAAAAUGCCACUUAAAUCCCA
........((((((((.((((((.....))))))(((((...---..(((((((..((((......))))...))))..)))....))))))))(((........)))...))))).... ( -37.30)
>DroSim_CAF1 43054 117 + 1
GAAUUACCGUUUAGCCAGCAGGAAGUCGUCCUGUGUCAGCUA---AAGGAGGCUUAACCCGCAAAGGGGUCUCGGCCAAUUCGACUCUGACGGCGGCUAUAAAAUGCCACUUAAAUCCCA
........((((((((.((((((.....))))))(((((...---..(((((((..((((......))))...))))..)))....))))))))(((........)))...))))).... ( -37.30)
>DroYak_CAF1 33447 117 + 1
GAAUUAUUGUUUAGCCAGCAGAAAGCCGUCCCGUGAAAGCUA---AGGGCGGCCUCACCUGCAAAGGGAACUCGGCCAAUUCGACUCUGAGGGCAGCUAUGAAAUGCCACUAAAAUCCCA
.................((((...(((((((.((....))..---.))))))).....))))...((((.(((((...........)))))((((.........)))).......)))). ( -35.40)
>consensus
GAAUUACCGUUUAGCCAGCAGGAAGUCGUCCUGUGUCAGCUA___AAGGAGGCUUAACCCGCAAAGGGGUCUCGGCCAAUUCGACUCUGACGGCGGCUAUAAAAUGCCACUUAAAUCCCA
.............(((..(((..(((((((((..............))))((((...(((.....))).....))))....))))))))..)))(((........)))............ (-30.01 = -30.02 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:05 2006