Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,113,705 – 4,113,822 |
Length | 117 |
Max. P | 0.847314 |
Location | 4,113,705 – 4,113,822 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 91.60 |
Mean single sequence MFE | -28.68 |
Consensus MFE | -21.83 |
Energy contribution | -22.32 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.14 |
Mean z-score | -2.48 |
Structure conservation index | 0.76 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.847314 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4113705 117 + 20766785 CAUUGUUUUUUUUUUCCCGAAGCGACGCAACUUUUCAGCUUUUUCUUCAGGUUUUCACUUUUGUUUUGUUCCAUUU-UUUGUGGACAUGAAAAUGUCUGGGUCGUGGAAAA-AAAAACA ...(((((((((((((.....(((((.((((((((((..........((((........))))...(((.((((..-...))))))))))))).)).)).)))))))))))-))))))) ( -28.20) >DroSim_CAF1 25254 117 + 1 CAUUGUUUUUUUU--UCCGAAGCGACGCAACUUUUCAGCUUUUUCUUCAGGUUUUCACUUUUGUUUUGUUCCAUUUUUUUGUGGACAUGAAAAUGUCUGGGUCGGGGAAAAAAAAAACA .....((((((((--(((....((((.((((((((((..........((((........))))...(((.((((......))))))))))))).)).)).)))).)))))))))))... ( -26.50) >DroEre_CAF1 4444 110 + 1 CAUUGUUUU--UU--UCCGAAGCGACGCAGGUUUUCAGCUUUUUCUUCAGGUUUUCACUUCUGUUUUGUUCCACUU-UUUGUGGACAUGGAAAUGUCUGGGUCGG---AAGA-AAAACA .....((((--((--((((((((((.(((((.....(((((.......)))))......))))).)))))((((..-...))((((((....)))))))).))))---))))-)))... ( -29.30) >DroYak_CAF1 10917 113 + 1 CAUUGUUUUUUUU--UCCGAAGCGACGCAAUUUUUCAGCUUUUUCUUCAGGUUUUCACUUUUGUUUUGUUCCAUUU-UUUGUGGACAUGAAAAUGUCUGGGUCGG---AAAAAAAAACA ...((((((((((--((((((((((.((((......(((((.......))))).......)))).)))))......-.....((((((....))))))...))))---))))))))))) ( -30.72) >consensus CAUUGUUUUUUUU__UCCGAAGCGACGCAACUUUUCAGCUUUUUCUUCAGGUUUUCACUUUUGUUUUGUUCCAUUU_UUUGUGGACAUGAAAAUGUCUGGGUCGG___AAAAAAAAACA ...((((((((((..(((((..(((((....((((((..........((((........))))...(((.((((......))))))))))))))))).)..)))))...)))))))))) (-21.83 = -22.32 + 0.50)
Location | 4,113,705 – 4,113,822 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 91.60 |
Mean single sequence MFE | -28.02 |
Consensus MFE | -19.94 |
Energy contribution | -21.25 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.00 |
Mean z-score | -3.90 |
Structure conservation index | 0.71 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4113705 117 - 20766785 UGUUUUU-UUUUCCACGACCCAGACAUUUUCAUGUCCACAAA-AAAUGGAACAAAACAAAAGUGAAAACCUGAAGAAAAAGCUGAAAAGUUGCGUCGCUUCGGGAAAAAAAAAACAAUG (((((((-((((((.(((....(((.((((((((((((....-...))).)))........((....)).))))))...((((....))))..)))...))))).)))))))))))... ( -27.80) >DroSim_CAF1 25254 117 - 1 UGUUUUUUUUUUCCCCGACCCAGACAUUUUCAUGUCCACAAAAAAAUGGAACAAAACAAAAGUGAAAACCUGAAGAAAAAGCUGAAAAGUUGCGUCGCUUCGGA--AAAAAAAACAAUG (((((((((((((..((((.(((...(((((((.((((........))))...........))))))).))).......((((....))))..))))....)))--))))))))))... ( -26.30) >DroEre_CAF1 4444 110 - 1 UGUUUU-UCUU---CCGACCCAGACAUUUCCAUGUCCACAAA-AAGUGGAACAAAACAGAAGUGAAAACCUGAAGAAAAAGCUGAAAACCUGCGUCGCUUCGGA--AA--AAAACAAUG ((((((-(.((---((((....(((.((((..(((((((...-..)))).)))...(((..((....)))))..))))..((.........)))))...)))))--))--))))))... ( -28.00) >DroYak_CAF1 10917 113 - 1 UGUUUUUUUUU---CCGACCCAGACAUUUUCAUGUCCACAAA-AAAUGGAACAAAACAAAAGUGAAAACCUGAAGAAAAAGCUGAAAAAUUGCGUCGCUUCGGA--AAAAAAAACAAUG (((((((((((---((((....(((.((((((((((((....-...))).)))........((....)).))))))....((.........)))))...)))))--))))))))))... ( -30.00) >consensus UGUUUUUUUUU___CCGACCCAGACAUUUUCAUGUCCACAAA_AAAUGGAACAAAACAAAAGUGAAAACCUGAAGAAAAAGCUGAAAAGUUGCGUCGCUUCGGA__AAAAAAAACAAUG ((((((((((....((((....(((.((((((((((((........))).)))........((....)).))))))....((.........)))))...))))...))))))))))... (-19.94 = -21.25 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:59 2006