Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,113,421 – 4,113,538 |
Length | 117 |
Max. P | 0.976267 |
Location | 4,113,421 – 4,113,538 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.68 |
Mean single sequence MFE | -42.93 |
Consensus MFE | -34.33 |
Energy contribution | -35.81 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.06 |
Mean z-score | -2.31 |
Structure conservation index | 0.80 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976267 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4113421 117 - 20766785 GCAUAAGCGCGCAAAAUGCGCGGCACACUUUU--CUCAAUAUUUCGCGUUGUGUGCCAUUGCGCCGUUAUUUUGAAGGUCAAGUGACCAGGGGAACCUUUACCGGAACUAGCGGCG-CCC ((....))((((.....))))(((((((....--................)))))))...((((((((((((((..((((....))))(((....)))....))))).))))))))-).. ( -48.35) >DroSim_CAF1 24962 117 - 1 GCAUGAGCGCGCAAAAUGCGCGGCACACUUUU--CUCAAUAUUUCGCGUUGUGUGCCAUUGCGCCGUUAUUUUGAAGGUCAAGUGACCAGGGAAACCUUUACCGGAACUAGCGGCG-CCC ((....))((((.....))))(((((((....--................)))))))...((((((((((((((..((((....))))(((....)))....))))).))))))))-).. ( -49.85) >DroEre_CAF1 4172 117 - 1 GCAUGAGCGCGCAAAAUGCGCGGCACACUUUA--CUCAAUAUUUCGCGUUGUGUGCCAUUGCGCCGUUAUUUUGAAGGUCAAGUGACCAGGAGAACCUUUUCCGGAACUAGCUGCG-GCC (((.....((((.....))))(((((((...(--(.(........).)).)))))))..)))(((((.........((((....)))).(((((....)))))..........)))-)). ( -41.80) >DroYak_CAF1 10619 111 - 1 GCAUGAGCGCGCAAAAUGCGCGGCACACUUUU--CUCAAUAUUUCGCGUUGUGU------GCGCCGUUAUUUUGAAGGUCAAGUGACCAGGGGAACCUUUUCCGGAACUAGCGGCG-GCC ((.....(((((.....)))))((((((....--................))))------))((((((((((((..((((....))))(((....)))....))))).))))))).-)). ( -41.95) >DroAna_CAF1 9387 120 - 1 GCAAGAGCGGACUAAAUGCGCGACACACUUUUUGCUCAAUAUUUAGUGUUGUGUGCCAUUGCGCCGUUAUUUUGAAGGUCAAGUGACCAGGGGAACCUUCUCCGGAACUGCCUCCCUCCU ....(((.(((......(((((((((((....((((........))))..)))))...)))))).(((........((((....)))).(((((....)))))..)))....)))))).. ( -32.70) >consensus GCAUGAGCGCGCAAAAUGCGCGGCACACUUUU__CUCAAUAUUUCGCGUUGUGUGCCAUUGCGCCGUUAUUUUGAAGGUCAAGUGACCAGGGGAACCUUUUCCGGAACUAGCGGCG_CCC ((....(((((.....)))))(((((((......................)))))))...))((((((((((((..((((....))))(((....)))....))))).)))))))..... (-34.33 = -35.81 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:57 2006