| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,112,443 – 4,112,563 |
| Length | 120 |
| Max. P | 0.582192 |
| Location | 4,112,443 – 4,112,563 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.92 |
| Mean single sequence MFE | -42.43 |
| Consensus MFE | -35.18 |
| Energy contribution | -37.22 |
| Covariance contribution | 2.04 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4112443 120 + 20766785 ACGCUUUCUUCCGCAAGUGCGGGGAAAUCACCGUCUCGCCGGACGUGCAGAGCUUCGGCUUCAACUGCGCCUUCUGUCCGGCGAUCUGCCUGCAGUUCUCCGUGUUCAUGGACCACAUCC .........((((..((..(((((((.........((((((((((((((((((....)))....)))))).....))))))))).(((....))))))))))..))..))))........ ( -49.60) >DroSim_CAF1 23977 120 + 1 ACGCGUUCUUCCGCAAGUGCGGGGAAAUCACCGCCUCGCCGGACGUGCAGAGCUUCGGCUUCAACUGCGCCUUUUGUCCGGCGAUCUGCCUGCAGUUCUCCGUGUUCAUGGACCACAUCC ....((...((((..((..(((((((.........((((((((((((((((((....)))....)))))).....))))))))).(((....))))))))))..))..))))..)).... ( -49.90) >DroEre_CAF1 3103 120 + 1 ACGCGUUCUUCCGCAAGUGCGGGGAAAUCACCGUCUCGCCGGACGUGCAGAGUUUCGGGUUCAACUGCGCCUUCUGCCCGGCCAUCUGCCUGCAGUUCUCCGUGUUCAUGGACCACAUCC ....((...((((..((..(((((((.....(((((....))))).(((((...((((((...............))))))...)))))......)))))))..))..))))..)).... ( -37.96) >DroYak_CAF1 9513 120 + 1 ACGCGUUCUUCCGCAAAUGCGGGGAAAUCACCGCCUCGCCGGACGUGCAGAGUUUCGGCUUCAAUUGCGCCUUCUGUCCGGCCAUCUGCCUGCAGUUCUCCGUGUUCAUGGACCACAUCC ....((...((((..(((((((((((...........((((((((((((((((....))))....))))).....)))))))...(((....))))))))))))))..))))..)).... ( -40.00) >DroAna_CAF1 8492 120 + 1 AUGCCUACUUCCGGAAGUGCGGGGAGAUCACCGCCUCGCCGGACGUCCAGUGCUUCGGCUUCAAUUGCGCCUUCUGCCCGUCCAUUUGCCUCCAGUUCUCCGUGUUCAUGGACCACAUCC ............(((.((((((((.(.....).)))))).(((((..(((......(((.........)))..)))..)))))....)).))).((..(((((....)))))..)).... ( -34.70) >consensus ACGCGUUCUUCCGCAAGUGCGGGGAAAUCACCGCCUCGCCGGACGUGCAGAGCUUCGGCUUCAACUGCGCCUUCUGUCCGGCCAUCUGCCUGCAGUUCUCCGUGUUCAUGGACCACAUCC .........((((..((..(((((((...........((((((((((((((((....)))....)))))).....)))))))...(((....))))))))))..))..))))........ (-35.18 = -37.22 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:56 2006