Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,110,336 – 4,110,452 |
Length | 116 |
Max. P | 0.789587 |
Location | 4,110,336 – 4,110,452 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 73.11 |
Mean single sequence MFE | -32.18 |
Consensus MFE | -19.81 |
Energy contribution | -19.70 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.38 |
Mean z-score | -1.43 |
Structure conservation index | 0.62 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789587 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4110336 116 - 20766785 CUUCAUCGUGGGUGACAGUCCAAAGGAUCGAUUCGGCAUGAUCUGCAAGGCGUGCCACGCCCACAACGGUGGGUUAUGAUUACUAAAGGAGAACUUCUAUAAGUAGACAUAGAAAC .(((((((((((((.(.((((...)))).)....((((((.((.....)))))))).)))))))...))))))(((((.(((((..((((....))))...))))).))))).... ( -35.10) >DroGri_CAF1 13796 88 - 1 CUUUAUUGUGGGCGACAGUCCACAGAAUCGCUUUGGCAUGAUAUGCAAGGAGUGCCACAGGCAUAAUGGUAAAAAU------CAGUGCAAUUAC---------------------- .....((((((((....)))))))).....((.((((((..(......)..)))))).))((((..((((....))------))))))......---------------------- ( -25.00) >DroSec_CAF1 14465 116 - 1 CUUCAUCGUGGGUGACAGUCCAAAGGAUCGAUUCGGCAUGAUCUGCAAGGCGUGCCACGCCCACAACGGUGUGUUAUGAUUACUAAGGGAGAACUUCUAUAAUUAGUCAUAGAAAC ...(((((((((((.(.((((...)))).)....((((((.((.....)))))))).)))))))...))))..(((((((((.((.((((....)))).))..))))))))).... ( -33.80) >DroEre_CAF1 875 116 - 1 CUUCAUCGUGGGUGACAGUCCAAAGGAUCGAUUCGGCAUGAUCUGCAAGGCGUGCCACGCCCACAACGGUGGGUUAUGAUUGCUAAAGGAUAACUUCUGGAAUUAGGCACAGAAAC ..((((.....))))..(((....((((((........))))))....)))(((((..((((((....))))))..(((((.(..(((.....)))..).))))))))))...... ( -34.20) >DroYak_CAF1 7258 116 - 1 CUUCAUCGUGGGUGACAGUCCAAAGGAUCGAUUCGGCAUGAUCUGCAAGGCGUGCCACGCCCACAACGGUGGGUUAUGACUGCUAAAGGAGAACUUCUAUAAUUAGGCACAGAAAC ((((...(((((((.(.((((...)))).)....((((((.((.....)))))))).)))))))...((..(.......)..))...))))....((((....))))......... ( -33.00) >DroAna_CAF1 6554 95 - 1 CUUCAUUGUGGGCGAUACGCCACAGAAUCGCUUCGGCAUGAUCUGCAAGGCGUGCCACGCUCACAACGGUAAC-----AAAGCUACAGAAUUCUUUUUGU---------------- ..((.(((((((((.((((((.((((.((((....))..))))))...))))))...))))))))).))....-----......((((((....))))))---------------- ( -32.00) >consensus CUUCAUCGUGGGUGACAGUCCAAAGGAUCGAUUCGGCAUGAUCUGCAAGGCGUGCCACGCCCACAACGGUGGGUUAUGAUUGCUAAAGGAGAACUUCUAUAAUUAG_CA_AGAAAC .(((((((((((((..........(((....)))((((((.((.....)))))))).)))))))...))))))........................................... (-19.81 = -19.70 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:55 2006