Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,108,922 – 4,109,028 |
Length | 106 |
Max. P | 0.548945 |
Location | 4,108,922 – 4,109,028 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 95.71 |
Mean single sequence MFE | -32.33 |
Consensus MFE | -32.73 |
Energy contribution | -33.07 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.28 |
Structure conservation index | 1.01 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548945 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4108922 106 - 20766785 UUCAAUUUCGCUGGCUUUUAUUUAGCUUUAUUCUGUUUUUCCGGGCCAUUGAUCAAGGCUAACGAGAUCGAUCGGCUGGC----UGGCUGGCCUGGCCGCCUGGCAAUCU .........((((((........(((........)))......(((((((((((..(.....)..))))))..(((..(.----...)..))))))))))).)))..... ( -32.10) >DroSim_CAF1 16739 106 - 1 UUCAAUUUCGCUGGCUUUUAUUUAGCUUUAUUCUGUUUUUCCGGGCCAUUGAUCAAGGCUAACGAGAUCGAUCGGCUGGC----UGGCUGGCCUGGCCGCCUGGCAAUCU .........((((((........(((........)))......(((((((((((..(.....)..))))))..(((..(.----...)..))))))))))).)))..... ( -32.10) >DroYak_CAF1 5918 110 - 1 UUCAAUUUCGCUGGCUUUUAUUUAGCUUUAUUCUGUUUUUCCGGGCCAUUGAUCAAGGCUAACGAGAUCGAUCGGCUGGCUGGCCUGCUUGCCUGGCCGCCUGGCAAUCU .........((((((............................(((((((((((..(.....)..))))))).))))(((((((......))).))))))).)))..... ( -32.80) >consensus UUCAAUUUCGCUGGCUUUUAUUUAGCUUUAUUCUGUUUUUCCGGGCCAUUGAUCAAGGCUAACGAGAUCGAUCGGCUGGC____UGGCUGGCCUGGCCGCCUGGCAAUCU .........((((((........(((........)))......(((((((((((..(.....)..))))))..(((((((......))))))))))))))).)))..... (-32.73 = -33.07 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:52 2006