Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,108,179 – 4,108,273 |
Length | 94 |
Max. P | 0.788929 |
Location | 4,108,179 – 4,108,273 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 75.37 |
Mean single sequence MFE | -22.40 |
Consensus MFE | -13.62 |
Energy contribution | -14.02 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.11 |
Mean z-score | -1.73 |
Structure conservation index | 0.61 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4108179 94 + 20766785 AAAAUAGCGAAAAUAGCGCAAUUCGCACUGACACACAAAUUAUGAGCUAAUCAGGCAGCGCCCAGUGCCCGCGGGUCGG---CACACGACCAUCGGA ......(((.......))).....((((((............(((.....)))(((...)))))))))(((..(((((.---....)))))..))). ( -28.50) >DroPse_CAF1 3458 78 + 1 CA--------------UGAAAACCGCAGUGCCACACAAAUUAUGAGCUAAUCAGGCAGCACCCAUUGCCA-CAGGUCGCAGCAACACGACACA---- ..--------------........((.(((((..........(((.....)))(((((......))))).-..)).))).))...........---- ( -15.00) >DroSec_CAF1 12301 94 + 1 AAAAUAGCGAAAAUAGCGCAAUUCGCACUGCCACACAAAUUAUGAGCUAAUCAGGCAGCGCCCAGUGCCCGCGGGUCGG---CACACGACCAUCGGA ......((.......))(((....((.(((((..........(((.....)))))))).))....)))(((..(((((.---....)))))..))). ( -28.60) >DroSim_CAF1 16057 94 + 1 AAAAUAGCGAAAAUAUCGCAAUUCGCACUGCCACACAAAUUAUGAGCUAAUCAGGCAGCGCCCAAUGCCCGCGGGUCGG---CACACGACCAUCGGA ......((((.....)))).....((.(((((..........(((.....)))))))).)).......(((..(((((.---....)))))..))). ( -28.20) >DroPer_CAF1 3487 78 + 1 CA--------------UGAAAACCCCAGUGCCACACAAAUUAUGAGCUAAUCAGGCAGCACCCAUUGCCC-CAGGUCGCAGCAACACGACACA---- ..--------------...........(((((..........(((.....)))(((((......))))).-..)).)))..............---- ( -11.70) >consensus AAAAUAGCGAAAAUA_CGCAAUUCGCACUGCCACACAAAUUAUGAGCUAAUCAGGCAGCGCCCAGUGCCCGCGGGUCGG___CACACGACCAUCGGA ................(((.....((((((............(((.....)))((.....))))))))..)))(((((........)))))...... (-13.62 = -14.02 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:51 2006