Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,106,607 – 4,106,699 |
Length | 92 |
Max. P | 0.749740 |
Location | 4,106,607 – 4,106,699 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 90.73 |
Mean single sequence MFE | -33.10 |
Consensus MFE | -24.08 |
Energy contribution | -24.58 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.28 |
Structure conservation index | 0.73 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749740 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4106607 92 + 20766785 AACUUUUUCAGACGCUAUCCUUGUG---GGCAGAAACUUGGCUCAAAGGGCACUUACCAGCUUGCAGAACAUGUUGGCUGAGGUGAGUGGGUGGU ............((((.(((((.((---(((.........))))))))))((((((((((((.(((.....))).))))..)))))))))))).. ( -31.50) >DroSec_CAF1 10720 92 + 1 AACUUUUUCAGACGCUAUCCUUGUG---GGCAGAGACGCGGCUCAAAGGGCACUUACCAGCUUGCAGAACAUGUUGGCUGAGGUGAGUGGGUGGU ............((((.(((((.((---(((.(.....).))))))))))((((((((((((.(((.....))).))))..)))))))))))).. ( -31.80) >DroSim_CAF1 14489 92 + 1 AACUUUUUCAGACGCUAUCCUUGUG---GGCAGAAACUCGGCUCAAAGGGCACUUACCAGCUUGCAGAACAUGUUGGCUGAGGUGAGUGGGUGGU ............((((.(((((.((---(((.(.....).))))))))))((((((((((((.(((.....))).))))..)))))))))))).. ( -32.60) >DroYak_CAF1 3730 93 + 1 AACUUGUUCAUAUGCUAUCCUUGAGUGGAGGAGAGACUCGGCUCAAUGGG--CUUACCAGCUUGCAGAACAUGUUGGCUAUGGUGAGUGGGUGGU .............(((((((((((((.(((......))).))))))...(--((((((((((.(((.....))).)))..))))))))))))))) ( -36.50) >consensus AACUUUUUCAGACGCUAUCCUUGUG___GGCAGAAACUCGGCUCAAAGGGCACUUACCAGCUUGCAGAACAUGUUGGCUGAGGUGAGUGGGUGGU .............(((((((....................(((.....)))(((((((((((.(((.....))).))))..)))))))))))))) (-24.08 = -24.58 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:50 2006