Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,106,396 – 4,106,491 |
Length | 95 |
Max. P | 0.958491 |
Location | 4,106,396 – 4,106,491 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 62.86 |
Mean single sequence MFE | -29.42 |
Consensus MFE | -17.19 |
Energy contribution | -17.00 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.27 |
Mean z-score | -1.89 |
Structure conservation index | 0.58 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958491 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4106396 95 + 20766785 GGGCAGCAGGUUGGUGUUGUGGCUUGGCCACCGCCAGGGCCACGAAGGUAGCGAAAAGCUU--UGAAAAGAUUU-UAAAAAAA----------UAUGGAAUUUUUAAA ((((.....((((.(.((((((((((((....)))).)))))))).).)))).....))))--...((((((((-((......----------..))))))))))... ( -26.30) >DroVir_CAF1 11690 75 + 1 GGGCAGCUGGCGGAUGCUGUGGCUUGGCCAGAGCCAGCGCCAGGCAGGAGGCGAGCAGCUGCA---GGAGCACA-AAGU----------------------------- ..(((((((.((..(.((((((((((((....))))).)))..)))).)..))..))))))).---........-....----------------------------- ( -32.20) >DroSec_CAF1 10500 96 + 1 GGGCAGCAGGUUGGUGCUGGGGCUUGGCCACCGCCAGGGCCACGAAGGUAGCGAAAAGCUA-GUGAAAAGAUUA-CAAAUAUA----------UAUAUUAUUCGUAAA ...(((((......)))))((.((((((....)))))).))(((((..((((.....))))-((((.....)))-).......----------.......)))))... ( -29.30) >DroSim_CAF1 14281 94 + 1 GGGCAGCAGGUUGGUGCUGGGGCUUGGCCACCGCCAGGGCCACGAAGGUAGCGAAAAGCUA-GUGAAAAGAUAA-CAAAUAUA----------UUGA--AUUCGUAAA ...(((((......)))))((.((((((....)))))).))((((((.((((.....))))-.)..........-(((.....----------))).--.)))))... ( -27.90) >DroWil_CAF1 14709 94 + 1 GGGCAGCUUGCUGAUGCUGUGGCUUGGCCAAAGUCAAUGCCAGGCAGGAGACGAACAGGAG-CUGAAAAGGGGACGCAAGGGUUUGUUAUCC-----------A--UG ...((((((.(((.((((.(((((((((....))))).))))))))(....)...))))))-)))....(....)....((((.....))))-----------.--.. ( -32.40) >DroYak_CAF1 3452 107 + 1 GGGCAGCAGGUUGGUGCUGGGGCUUGGCCACCGCCAGAGCCACGAAAGUAGCGAAAAGCUGUGUAAGGAGAUUA-GGAAUAAGUGUUUAAUUGUAUUGAAUUCAUAAA ..(((((...(((.((((..((((((((....)))).)))).....)))).)))...))))).....(((.(((-(..((((........)))).)))).)))..... ( -28.40) >consensus GGGCAGCAGGUUGGUGCUGGGGCUUGGCCACCGCCAGGGCCACGAAGGUAGCGAAAAGCUG_GUGAAAAGAUUA_CAAAUAAA__________UAU___AUUCAUAAA ...((((........)))).((((((((....))))).)))........(((.....)))................................................ (-17.19 = -17.00 + -0.19)
Location | 4,106,396 – 4,106,491 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 62.86 |
Mean single sequence MFE | -21.47 |
Consensus MFE | -12.26 |
Energy contribution | -13.07 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.12 |
Mean z-score | -1.51 |
Structure conservation index | 0.57 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4106396 95 - 20766785 UUUAAAAAUUCCAUA----------UUUUUUUA-AAAUCUUUUCA--AAGCUUUUCGCUACCUUCGUGGCCCUGGCGGUGGCCAAGCCACAACACCAACCUGCUGCCC ((((((((.......----------..))))))-)).........--.(((.....)))......(((((..((((....)))).))))).................. ( -18.80) >DroVir_CAF1 11690 75 - 1 -----------------------------ACUU-UGUGCUCC---UGCAGCUGCUCGCCUCCUGCCUGGCGCUGGCUCUGGCCAAGCCACAGCAUCCGCCAGCUGCCC -----------------------------....-........---.(((((((...((....(((.((((..((((....)))).))))..)))...))))))))).. ( -27.70) >DroSec_CAF1 10500 96 - 1 UUUACGAAUAAUAUA----------UAUAUUUG-UAAUCUUUUCAC-UAGCUUUUCGCUACCUUCGUGGCCCUGGCGGUGGCCAAGCCCCAGCACCAACCUGCUGCCC .(((((((((.....----------..))))))-))).........-.........(((((....)))))...(((((.(((...)))))((((......))))))). ( -23.50) >DroSim_CAF1 14281 94 - 1 UUUACGAAU--UCAA----------UAUAUUUG-UUAUCUUUUCAC-UAGCUUUUCGCUACCUUCGUGGCCCUGGCGGUGGCCAAGCCCCAGCACCAACCUGCUGCCC ...(((((.--..((----------((....))-))..........-((((.....))))..)))))(((..((((....)))).))).(((((......)))))... ( -20.90) >DroWil_CAF1 14709 94 - 1 CA--U-----------GGAUAACAAACCCUUGCGUCCCCUUUUCAG-CUCCUGUUCGUCUCCUGCCUGGCAUUGACUUUGGCCAAGCCACAGCAUCAGCAAGCUGCCC ..--.-----------((((..(((....))).))))......(((-((.(((...(((........)))..((.((.((((...)))).)))).)))..)))))... ( -18.10) >DroYak_CAF1 3452 107 - 1 UUUAUGAAUUCAAUACAAUUAAACACUUAUUCC-UAAUCUCCUUACACAGCUUUUCGCUACUUUCGUGGCUCUGGCGGUGGCCAAGCCCCAGCACCAACCUGCUGCCC .................................-.............((((.....(((((....))))).((((.(((......))))))).........))))... ( -19.80) >consensus UUUACGAAU___AUA__________UAUAUUUC_UAAUCUUUUCAC_CAGCUUUUCGCUACCUUCGUGGCCCUGGCGGUGGCCAAGCCACAGCACCAACCUGCUGCCC .................................................(((....(((((....)))))..((((....)))))))..((((........))))... (-12.26 = -13.07 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:49 2006