Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,104,626 – 4,104,742 |
Length | 116 |
Max. P | 0.692237 |
Location | 4,104,626 – 4,104,742 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.47 |
Mean single sequence MFE | -27.86 |
Consensus MFE | -19.25 |
Energy contribution | -18.75 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.26 |
Mean z-score | -1.68 |
Structure conservation index | 0.69 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645677 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4104626 116 + 20766785 AUUUUUCCCCAUUGCUUCAGUUAUUUGCCUUUAUUCCUGGCUAGUGGCGUACUCUUUUUACGCCGCCUUAGGAGGACCUCUCUUCAUCUGAAUGUGAUCCAUUGCCAAGUA----AUAAA ...................((((((((.(.....((((((...((((((((.......)))))))).))))))(((..((.((((....))).).)))))...).))))))----))... ( -26.80) >DroSec_CAF1 8784 116 + 1 AUUAUUUCCCAAUACUUUAGUUGUAUGCCUUUAUUUCUGGCUAGUGGCGUACUCCUUUUACGCCGCCUUGGGAGGACCUCUCUUCAUCUGAAUGCGAUCCUUUGCAAAGUA----AUAAA ....(((((((((((.......))))(((.........)))..((((((((.......))))))))..))))))).................(((((....))))).....----..... ( -29.10) >DroSim_CAF1 12578 116 + 1 AUUAUUUCCCAAUACUUUAGUUGUAUGCAUUUAUUUCUGGCUAGUGGCGUACUCCUUUUACGCCGCCUUAGGAGGACCUCUCUUCAUCUGAAUGCGAUCCUUUGCAAAGUA----AUAAA (((((((..((((((.......))))(((((((.......(((((((((((.......))))))))..)))(((((....)))))...))))))).......))..)))))----))... ( -27.50) >DroYak_CAF1 1680 120 + 1 ACUGUUUUCGACUUCCUCAGUUAUAUGUCUAUAUUUCUGGCUGGUGGCAUACUCUUUUUACGCCGCCUUAGGAGGCCCGCUAUUCAUCUGAAGGGGAUCCUCUACCAAGAAGCUAUUGAA ......(((((......(((..((((....))))..)))(((((((((.............))))))...((((((((....(((....))).)))..))))).......)))..))))) ( -28.02) >consensus AUUAUUUCCCAAUACUUCAGUUAUAUGCCUUUAUUUCUGGCUAGUGGCGUACUCCUUUUACGCCGCCUUAGGAGGACCUCUCUUCAUCUGAAUGCGAUCCUUUGCAAAGUA____AUAAA ............(((.((((.............(((((((...((((((((.......)))))))).))))))).............)))).(((((....)))))..)))......... (-19.25 = -18.75 + -0.50)
Location | 4,104,626 – 4,104,742 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.47 |
Mean single sequence MFE | -29.42 |
Consensus MFE | -20.31 |
Energy contribution | -20.50 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.14 |
Mean z-score | -1.75 |
Structure conservation index | 0.69 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692237 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4104626 116 - 20766785 UUUAU----UACUUGGCAAUGGAUCACAUUCAGAUGAAGAGAGGUCCUCCUAAGGCGGCGUAAAAAGAGUACGCCACUAGCCAGGAAUAAAGGCAAAUAACUGAAGCAAUGGGGAAAAAU (((((----(.((((((...(((((.(.(((....)))..).)))))......((.((((((.......)))))).)).))))))))))))............................. ( -29.90) >DroSec_CAF1 8784 116 - 1 UUUAU----UACUUUGCAAAGGAUCGCAUUCAGAUGAAGAGAGGUCCUCCCAAGGCGGCGUAAAAGGAGUACGCCACUAGCCAGAAAUAAAGGCAUACAACUAAAGUAUUGGGAAAUAAU .((((----(..........(((((...(((....)))....)))))((((((.((((((((.......))))))....(((.........)))...........)).))))))))))). ( -31.90) >DroSim_CAF1 12578 116 - 1 UUUAU----UACUUUGCAAAGGAUCGCAUUCAGAUGAAGAGAGGUCCUCCUAAGGCGGCGUAAAAGGAGUACGCCACUAGCCAGAAAUAAAUGCAUACAACUAAAGUAUUGGGAAAUAAU ((((.----(((((((((.((((((...(((....)))....)))))).....(((((((((.......))))))....))).........))))........))))).))))....... ( -26.40) >DroYak_CAF1 1680 120 - 1 UUCAAUAGCUUCUUGGUAGAGGAUCCCCUUCAGAUGAAUAGCGGGCCUCCUAAGGCGGCGUAAAAAGAGUAUGCCACCAGCCAGAAAUAUAGACAUAUAACUGAGGAAGUCGAAAACAGU .......((((((((((.((((..(((((((....))..)).)))))))....((.((((((.......)))))).)).))).....((((....))))....))))))).......... ( -29.50) >consensus UUUAU____UACUUGGCAAAGGAUCGCAUUCAGAUGAAGAGAGGUCCUCCUAAGGCGGCGUAAAAAGAGUACGCCACUAGCCAGAAAUAAAGGCAUACAACUAAAGUAUUGGGAAAUAAU ............(((((...(((((...(((....)))....)))))......((.((((((.......)))))).)).))))).................................... (-20.31 = -20.50 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:47 2006