Locus 958

Sequence ID 2R_DroMel_CAF1
Location 4,100,869 – 4,100,960
Length 91
Max. P 0.936953
window1709

overview

Window 9

Location 4,100,869 – 4,100,960
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 97.80
Mean single sequence MFE -28.77
Consensus MFE -27.59
Energy contribution -27.70
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.33
Structure conservation index 0.96
SVM decision value 1.26
SVM RNA-class probability 0.936953
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4100869 91 + 20766785
AAUAUCCAUUAUGCAAUUUGGCAUGGCUAAAACGAGCAAUUUGCCGCAAAUGCAAUAACAUCCCGGCGAACGGGGUGGGGAAAGCCGAUGG
.....(((((.((((.(((((((..(((......)))....))))).)).))))....(((((((.....)))))))((.....))))))) ( -30.70)
>DroSec_CAF1 4962 91 + 1
AAUAUCCAUUAUGCAAUUUGGCAUGACUAAAACGAGCAAUUUGCCGCAAAUGCAAUAACAUCCCGCCGAACGGGGUGGGGAAAGCCGGUGG
.....(((((((((......))))).......((.((..(((.((((....)).....(((((((.....))))))))).))))))))))) ( -26.30)
>DroSim_CAF1 4988 91 + 1
AAUAUCCAUUAUGCAAUUUGGCAUGGCUAAAACGAGCAAUUUGCCGCAAAUGCAAUAACAUCCCGCCGAACGGGGUGGGGAAAGCCGGUGG
.....(((((.((((.(((((((..(((......)))....))))).)).))))......(((((((......)))))))......))))) ( -29.30)
>consensus
AAUAUCCAUUAUGCAAUUUGGCAUGGCUAAAACGAGCAAUUUGCCGCAAAUGCAAUAACAUCCCGCCGAACGGGGUGGGGAAAGCCGGUGG
.....(((((.((((.(((((((..(((......)))....))))).)).))))....(((((((.....)))))))((.....))))))) (-27.59 = -27.70 +   0.11) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:46 2006