Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,100,869 – 4,100,960 |
Length | 91 |
Max. P | 0.936953 |
Location | 4,100,869 – 4,100,960 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 97.80 |
Mean single sequence MFE | -28.77 |
Consensus MFE | -27.59 |
Energy contribution | -27.70 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.33 |
Structure conservation index | 0.96 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.936953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4100869 91 + 20766785 AAUAUCCAUUAUGCAAUUUGGCAUGGCUAAAACGAGCAAUUUGCCGCAAAUGCAAUAACAUCCCGGCGAACGGGGUGGGGAAAGCCGAUGG .....(((((.((((.(((((((..(((......)))....))))).)).))))....(((((((.....)))))))((.....))))))) ( -30.70) >DroSec_CAF1 4962 91 + 1 AAUAUCCAUUAUGCAAUUUGGCAUGACUAAAACGAGCAAUUUGCCGCAAAUGCAAUAACAUCCCGCCGAACGGGGUGGGGAAAGCCGGUGG .....(((((((((......))))).......((.((..(((.((((....)).....(((((((.....))))))))).))))))))))) ( -26.30) >DroSim_CAF1 4988 91 + 1 AAUAUCCAUUAUGCAAUUUGGCAUGGCUAAAACGAGCAAUUUGCCGCAAAUGCAAUAACAUCCCGCCGAACGGGGUGGGGAAAGCCGGUGG .....(((((.((((.(((((((..(((......)))....))))).)).))))......(((((((......)))))))......))))) ( -29.30) >consensus AAUAUCCAUUAUGCAAUUUGGCAUGGCUAAAACGAGCAAUUUGCCGCAAAUGCAAUAACAUCCCGCCGAACGGGGUGGGGAAAGCCGGUGG .....(((((.((((.(((((((..(((......)))....))))).)).))))....(((((((.....)))))))((.....))))))) (-27.59 = -27.70 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:46 2006