Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,099,513 – 4,099,613 |
Length | 100 |
Max. P | 0.555215 |
Location | 4,099,513 – 4,099,613 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 91.72 |
Mean single sequence MFE | -23.44 |
Consensus MFE | -21.93 |
Energy contribution | -22.26 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.94 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4099513 100 + 20766785 CCAGCAGGAGGACCCAGCUGAUAACACGUACCAAAACCACUUAUCCGUGUUGGCUUAGUAGCACGCAUAUGCAAAUCCAUGGGAACAUGAUUUGAUAAAA .((((.((.....)).)))).(((((((.................)))))))(((....))).....(((.((((((.(((....))))))))))))... ( -23.63) >DroSec_CAF1 3615 90 + 1 CCAGCAGGAGGACCCAGCUGAUAACACGUACC----------AUCCGUGUUGGCUUAGUAGCACGCAAAUGCAAAUCCAUGGGAACAUGAUUUGAUAAAA .((((.((.....)).)))).(((((((....----------...)))))))(((....))).........((((((.(((....)))))))))...... ( -24.50) >DroSim_CAF1 3582 90 + 1 CCAGCAGGAGGACCCAGCUGAUAACACGUACC----------AUCCGUGUUGGCUUAGUAGCACGCAAAUGCAAAUCCAUGGGAACAAGAUUUGAUAAAA .((((.((.....)).)))).(((((((....----------...)))))))(((....))).........((((((..((....)).))))))...... ( -22.20) >consensus CCAGCAGGAGGACCCAGCUGAUAACACGUACC__________AUCCGUGUUGGCUUAGUAGCACGCAAAUGCAAAUCCAUGGGAACAUGAUUUGAUAAAA .((((.((.....)).)))).(((((((.................)))))))(((....))).........((((((.(((....)))))))))...... (-21.93 = -22.26 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:41 2006