Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,098,257 – 4,098,364 |
Length | 107 |
Max. P | 0.884275 |
Location | 4,098,257 – 4,098,364 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 96.26 |
Mean single sequence MFE | -33.83 |
Consensus MFE | -31.92 |
Energy contribution | -32.03 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.14 |
Structure conservation index | 0.94 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884275 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4098257 107 - 20766785 AACUUGGCUUUUGGGCAAUCCCCAUUCUCUUAAUGACUCGCUCAGAGGCGUAACCUCUGCAGCGCCUUAGAAUUCCUCGGAGUUCCUGGUAUGCAAAUUAGCCGCCA .....((((..(..(((......................(((((((((.....)))))).)))(((...((((((....))))))..))).)))..)..)))).... ( -34.50) >DroSec_CAF1 2205 107 - 1 AACUUGGCUAUUGGGCAAUCCCCAUUCUCUUAAUGACCCGUUUAGAGGCGUAACCUCUGCAGCGCCUUAGAAUUCCUCGGAGUUCCUGGUAUGCAAAUGAGCGGCCA ....((((...((((.....))))..............((((((((((.....))))((((..(((...((((((....))))))..))).))))..)))))))))) ( -34.40) >DroSim_CAF1 2257 107 - 1 AACUUGGCUAUUGGGCAAUCCCCAUUCUCUUAAUGACCCGUUUAGAGGCGUAACCUCUGCAGCGCCUUAGAAUUCCUCGGAGUUCCUGGUAUGCAAAUGAGCCGCCA .....((((..((((.....))))..............((((((((((.....)))))(((..(((...((((((....))))))..))).)))))))))))).... ( -32.60) >consensus AACUUGGCUAUUGGGCAAUCCCCAUUCUCUUAAUGACCCGUUUAGAGGCGUAACCUCUGCAGCGCCUUAGAAUUCCUCGGAGUUCCUGGUAUGCAAAUGAGCCGCCA ....((((...((((.....))))...............(((((((((.....))))((((..(((...((((((....))))))..))).))))..))))).)))) (-31.92 = -32.03 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:40 2006