Locus 954

Sequence ID 2R_DroMel_CAF1
Location 4,097,729 – 4,097,822
Length 93
Max. P 0.871866
window1702

overview

Window 2

Location 4,097,729 – 4,097,822
Length 93
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 76.01
Mean single sequence MFE -27.63
Consensus MFE -14.77
Energy contribution -15.78
Covariance contribution 1.00
Combinations/Pair 1.25
Mean z-score -2.21
Structure conservation index 0.53
SVM decision value 0.87
SVM RNA-class probability 0.871866
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4097729 93 + 20766785
--AGAAUCCCAGAAUU-UCAGUUUGGCGCUUGGAGAGUUUUCUUUCCGCAUUGCUGAGCGCGCUAAGCGGUGUGAAAUUCAAAUUUAACGGACACC
--.........(((((-((((((((((((..((((((....))))))((........)))))))))))....))))))))................ ( -30.30)
>DroSec_CAF1 1697 93 + 1
--AGAAUGCCAGAAUU-UCAGCUUGGCGCUUGGAGAGUUUUCUUUCCGCAUUGCUGAGCGCGCUAAGCGGUGUGAAAUUCAAAUUUAACGGACACC
--.........(((((-((((((((((((..((((((....))))))((........)))))))))))....))))))))................ ( -32.70)
>DroSim_CAF1 1729 93 + 1
--AGAAUCCCAGAAUU-UCAGCUUGGCGCUUGGAGAGUUUUCUUUCCGCAUUGCUGAGCGCGCUAAGCGGUGUGAAAUUCAAAUUUAACGGACACC
--.........(((((-((((((((((((..((((((....))))))((........)))))))))))....))))))))................ ( -32.70)
>DroMoj_CAF1 3701 88 + 1
AAGGAAUGGCAUAAUAAUCAUCUUAACC--U---GAACUAAGUUUACGCUUUGCUAGAGCCACUAAAAAGAGCACAAUUCAAAUUGCUCGGCC---
..((..(((((..........((((...--.---....)))).........)))))...))........(((((..........)))))....--- ( -14.81)
>consensus
__AGAAUCCCAGAAUU_UCAGCUUGGCGCUUGGAGAGUUUUCUUUCCGCAUUGCUGAGCGCGCUAAGCGGUGUGAAAUUCAAAUUUAACGGACACC
...((((.............((((((((..(((((((....)))))))...))))))))(((((....)))))...))))................ (-14.77 = -15.78 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:39 2006