| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,096,573 – 4,096,684 |
| Length | 111 |
| Max. P | 0.962940 |
| Location | 4,096,573 – 4,096,684 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.33 |
| Mean single sequence MFE | -35.88 |
| Consensus MFE | -25.11 |
| Energy contribution | -24.99 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.962940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4096573 111 + 20766785 UCGCUAAACAAUUGAAACUGAAUAAA---AUUCUGAUUUAGUUGUGUUCGAAACUCAUCGGAAGAGCAG-AAAGCGGCGCAGAC----GCGACAGU-GCUGCGGCAGCGCCGCGGGCAGA (((....(((((((((.(.((((...---)))).).)))))))))...)))..(((.((....))....-...(((((((...(----(((.....-..))))...)))))))))).... ( -35.50) >DroSec_CAF1 580 111 + 1 UCGCUAAACAAUUGAAACUGAAUAAA---AUUCUGAUUUAGUUGUGUUCGAAACUCAUCGGAAGAGCAG-AAAGCGGCGCAGAC----GCGACAGU-GCUGCGGCAGCGCCGCGGGCAGA (((....(((((((((.(.((((...---)))).).)))))))))...)))..(((.((....))....-...(((((((...(----(((.....-..))))...)))))))))).... ( -35.50) >DroSim_CAF1 583 111 + 1 UCGCUAAACAAUUGAAACUGAAUAAA---AUUCUGAUUUAGUUGUGUUCGAAACUCAUCGGAAGAGCAG-AAAGCGGCGCAGAC----GCGACAGU-GCUGCGGCAGCGCCGCGGGCAGC ..(((..(((((((((.(.((((...---)))).).)))))))))((((....((..((....))..))-...(((((((...(----(((.....-..))))...)))))))))))))) ( -37.20) >DroWil_CAF1 4108 104 + 1 UCGCUAAACAAUUGAAACUGAAUAAAAAUAUUCUGAUUUAGUUGUAUUCGAAACUCAUCGAAAGAGCAA-AAAGCAACGCCGGC---------------UUCAGCGUCGGCGUCGGCGUC ..(((..(((((((((.(.(((((....))))).).))))))))).(((((......)))))..)))..-...((.((((((((---------------......))))))))..))... ( -33.50) >DroMoj_CAF1 2332 118 + 1 UCGCUAAACAAUUGAAACUGAAUAAAA--AUUCUGAUUUAGUUGUAUUCGAAACUCAUUGGAUGAGCAGCAAAGCAGCGCAGUUGGCGUUGACGUCGACAGCGACAGCGCUGCCAGCAGC ..(((..(((((((((.(.((((....--)))).).)))))))))((((((......)))))).))).((...(((((((.((((..((((....))))..)))).)))))))..))... ( -37.70) >consensus UCGCUAAACAAUUGAAACUGAAUAAA___AUUCUGAUUUAGUUGUGUUCGAAACUCAUCGGAAGAGCAG_AAAGCGGCGCAGAC____GCGACAGU_GCUGCGGCAGCGCCGCGGGCAGC ..(((..(((((((((.(.((((......)))).).))))))))).(((((......)))))..)))......(((((((..........................)))))))....... (-25.11 = -24.99 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:38 2006