Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,095,393 – 4,095,485 |
Length | 92 |
Max. P | 0.738723 |
Location | 4,095,393 – 4,095,485 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 77.76 |
Mean single sequence MFE | -26.51 |
Consensus MFE | -17.34 |
Energy contribution | -18.40 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.29 |
Mean z-score | -1.44 |
Structure conservation index | 0.65 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738723 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4095393 92 - 20766785 AUCGUAAUAUCGAAAAGCGCCGCUGGGGUUAU-----------------AAACUAAUC--GGACCCCAUGAUCGCGAUCAGCGAUAAUUCGCUUGGGCAGCGAUUAAAACG .(((......)))..........(((((((..-----------------.........--.)))))))(((((((..(((((((....)))).)))...)))))))..... ( -28.10) >DroSec_CAF1 8201 92 - 1 AUCGUAAUAUCGGAAAGCGCCGCUGGGGUUAU-----------------AAACUAAUC--GGACCCCAUGAUCGCGAUCAGCGAUAAUUCGCUUGGGCAGCGAUUAAUACG ..((((....(((......))).(((((((..-----------------.........--.)))))))(((((((..(((((((....)))).)))...))))))).)))) ( -30.30) >DroSim_CAF1 10331 92 - 1 AUCGUAAUAUCGAAAAGCGCCGCUGGGGUUAU-----------------AAACUAAUC--GGACCCCAUGAUCGCGAUCAGCGAUAAUUCGCUUGGGCAGCGAUUAAUACG ..((((.................(((((((..-----------------.........--.)))))))(((((((..(((((((....)))).)))...))))))).)))) ( -28.60) >DroEre_CAF1 8230 94 - 1 AUCGUAAUAUCGGAAAGCGCCGCUGGGGUCAU-----------------AAACUAAUCGCGGGCCCCAUGAUCGCGAUCAGCGAUAACUCGCUUGGGCAGCGACUAAUACG ..((((....(((......))).(((((((..-----------------............)))))))...((((..(((((((....)))).)))...))))....)))) ( -26.94) >DroYak_CAF1 8307 92 - 1 AUCGUAAUAUCGAAAAGCGCCGCUGGGGUCAU-----------------CAACUAAUC--GGGCCCCAUGAUCUCGAUCAGCGAUAAUUCGCUUGGCCAGCGCCUAAUCCG .(((......)))...((((.(((((((((..-----------------.........--.)))))).((((....))))((((....))))..)))..))))........ ( -27.60) >DroAna_CAF1 7502 107 - 1 AACG-GAUAUUGGACAUAUCCGAUCAGAU-AUAUAUCAUUCCCUUCAAAAAAAAAAUA--AAAAGAAAUGAUUGCGAUUAGCGAUAAUAAUUUCGGGCGGCGAUUAAAGUA ..((-(((((.....)))))))(((.(((-....)))...(((((......)).....--....(((((.(((((.....)))))....))))))))....)))....... ( -17.50) >consensus AUCGUAAUAUCGAAAAGCGCCGCUGGGGUUAU_________________AAACUAAUC__GGACCCCAUGAUCGCGAUCAGCGAUAAUUCGCUUGGGCAGCGAUUAAUACG .(((......)))..........(((((((...............................)))))))(((((((..(((((((....))))).))...)))))))..... (-17.34 = -18.40 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:37 2006