| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,093,990 – 4,094,090 |
| Length | 100 |
| Max. P | 0.500000 |
| Location | 4,093,990 – 4,094,090 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.69 |
| Mean single sequence MFE | -33.54 |
| Consensus MFE | -28.71 |
| Energy contribution | -28.93 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.86 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4093990 100 + 20766785 --------------------ACUCACCCGAACGAGAUGGCCUGACACUUCUCGCCCGCCUGCAGGCACUUCUCCUUGCACAUCUUCAGCGAGUUGGUGUCUUCGGUGCGGAAGGUCUUCU --------------------....(((....(((((.(........).))))).(((((((.(((((((....(((((.........)))))..))))))).))).))))..)))..... ( -32.90) >DroVir_CAF1 6635 120 + 1 UCCUUCGCCUGCUCGCCAGCACUCACCCGAACGAGAUGGCCUGACACUUCUCGCCCGCCUGCAGGCACUUCUCCUUGCACAUCUUCAGCGAGUUGGUGUCUUCGGUGCGGAAGGUCUUCU .((((((((((...((((...(((........))).))))..((((((.(((((.....((((((........))))))........)))))..))))))..))).)).)))))...... ( -39.22) >DroGri_CAF1 7551 102 + 1 ------------------GUAUUUACCCAAAUGAGAUGGCUUGACAUUUCUCGCCCGCCUGCAGGCACUUCUCCUUGCACAUCUUCAGCGAGUUGGUGUCUUCGGUGCGGAAGGUCUUCU ------------------......(((.....((((((......))))))....(((((((.(((((((....(((((.........)))))..))))))).))).))))..)))..... ( -32.60) >DroWil_CAF1 6171 100 + 1 --------------------ACUCACCCAAAAGAGAUGGACUGACACUUCUCGCCCGCCUGCAGGCACUUCUCCUUGCACAUUUUCAAUGAGUUGGUGUCUUCGGUGCGGAAGGUCUUCU --------------------.(((........)))..(((..(((.((((.((((((.....(((((((.(((.(((........))).)))..))))))).))).)))))))))).))) ( -31.20) >DroMoj_CAF1 8337 100 + 1 --------------------GCUCACCCGAAUGAGAUCGCCUGACACUUCUCGCCCGCCUGCAAGCACUUCUCCUUGCACAUCUUCAGCGAGUUGGUGUCUUCGGUGCGGAAGGUCUUCU --------------------.((((......))))..((((.((((((.(((((.....((((((........))))))........)))))..))))))...))))(....)....... ( -29.42) >DroAna_CAF1 6365 99 + 1 ---------------------CUUACCCGAACGAGAUGGCCUGACACUUCUCCCCCGCCUGGAGGCACUUCUCCUUGCACAUCUUCAGCGAGUUGGUGUCUUCGGUGCGGAAGGUCUUCU ---------------------............(((.(((((((....))....(((((((((((((((....(((((.........)))))..))))))))))).)))).))))).))) ( -35.90) >consensus ____________________ACUCACCCGAACGAGAUGGCCUGACACUUCUCGCCCGCCUGCAGGCACUUCUCCUUGCACAUCUUCAGCGAGUUGGUGUCUUCGGUGCGGAAGGUCUUCU .................................(((.(((((((......))..(((((((.(((((((.(((.(((........))).)))..))))))).))).)))).))))).))) (-28.71 = -28.93 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:36 2006