Locus 950

Sequence ID 2R_DroMel_CAF1
Location 4,083,583 – 4,083,703
Length 120
Max. P 0.845171
window1698

overview

Window 8

Location 4,083,583 – 4,083,703
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.00
Mean single sequence MFE -35.88
Consensus MFE -28.00
Energy contribution -26.80
Covariance contribution -1.20
Combinations/Pair 1.28
Mean z-score -1.87
Structure conservation index 0.78
SVM decision value 0.77
SVM RNA-class probability 0.845171
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4083583 120 - 20766785
UUAGAAGGUAUACAAGACCCACCUUCACUUGCAGUUUACCAAAACGCUCGCCUAUGCAAUUUCGAGGACCCUCGCCAAAAGGCAAAUAGGCGAAAGGAUGCCUAGCCUUAAUCUCUUCUG
...((((((...........))))))....((.((((....))))))((((((((........(((....)))(((....)))..))))))))((((........))))........... ( -31.80)
>DroSec_CAF1 66163 120 - 1
UCAGGAGAUGUACAAGACCCACCUUCACUUGCAGUUUACCAAAACGCUCGCCUAUGCAAUUUCGAGGACCUUCGCCAAAAGGCAAAUAGGCGAAAAGAUGUCUAGCCUUAAUCUCUUCUG
..(((((((...(.((((............((.((((....))))))((((((((........(((....)))(((....)))..))))))))......)))).).....)))))))... ( -29.00)
>DroSim_CAF1 74076 120 - 1
UCAGGAGGUAUACAAGACCCACCUUCACUUGCAACUUACCAAAACGCUCGCCUAUGCAAUUUCGAGGACCUUCACCGAAAGGCAAAUAGGCGAAAGGAUGUCUAGCCUUAAUCUCUUCUG
..(((((((...(.((((...((((.....((.............))((((((((((..(((((..(.....)..))))).)))..)))))))))))..)))).).....)))))))... ( -28.82)
>DroEre_CAF1 66658 120 - 1
UCAGGAGAUAUACGAGGCCCACCUUGACUUGCAGUUUGCCAAAUCGCUCGCCUAUGCAGUUACGAGGACCCUCGCCAAACGGCAAAUAGGCGAAGGGAUGUCGGGCCUUGAUCUCUUCUG
.(((((((.((.((((((((..........((.....))...(((.(((((((((........(((....)))(((....)))..))))))).)).)))...)))))))))).))))))) ( -49.80)
>DroYak_CAF1 70328 120 - 1
UUAGGAGGUACACAAGACCCACCUUGACUUGCAGCUUGCCAAAUCGCUCGCCUAUGCAGUUGCGAGGACCCUCGCCAAAUGGCAAAUAGGCGAAGGGAUGUCGGGCCCUAAUCUUUUCUG
(((((..(((..((((......))))...))).....(((..(((.(((((((((((..(((((((....)))).)))...)))..)))))).)).)))....))))))))......... ( -40.00)
>consensus
UCAGGAGGUAUACAAGACCCACCUUCACUUGCAGUUUACCAAAACGCUCGCCUAUGCAAUUUCGAGGACCCUCGCCAAAAGGCAAAUAGGCGAAAGGAUGUCUAGCCUUAAUCUCUUCUG
.(((((((....((((...........))))................((((((((........(((....)))(((....)))..))))))))((((........))))....))))))) (-28.00 = -26.80 +  -1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:35 2006