Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,345,701 – 1,345,810 |
Length | 109 |
Max. P | 0.744252 |
Location | 1,345,701 – 1,345,810 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.90 |
Mean single sequence MFE | -24.02 |
Consensus MFE | -18.88 |
Energy contribution | -18.92 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.74 |
Structure conservation index | 0.79 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744252 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1345701 109 + 20766785 AUUUGCUAGCAGUAU-----AUAUUGCUUGCCACCGAUUUGGCCUCAAUAUUUUGUGCCAAUUCCGCUCCCCUCC------AUCCAUUCAACGUUCUGAUCGGUUUUCGCAAUACGUACA ...........(((.-----.((((((.....(((((.(((((..(((....))).)))))..............------......(((......))))))))....))))))..))). ( -23.80) >DroSec_CAF1 63986 114 + 1 AUUUGCUAGCAGUGUACUAUAUAUUGCUUGCCACCGAUUUGGCCUCAAUAUUUUGUGCCAAUUCUGCUCCCCUCC------UGCCAUUCAGCGUUCUGAUCGGUUUUCGCAAUACGUACA ..((((.(((((.((((...((((((...((((......))))..))))))...)))).....))))).......------.(((..((((....))))..)))....))))........ ( -27.80) >DroSim_CAF1 42181 109 + 1 AUUUGCUAGCAGUGU-----AUAUUGCUUGCCACCGAUUUGGCCUCAAUAUUUUGUGCCAAUUCCGCUCCCCUCC------UGCCAUUCAGCGUUCUGAUCGGUUUUCGCAAUACGUACA ...........(((.-----.((((((.....(((((((((((..(((....))).))))....((((.......------........))))....)))))))....))))))..))). ( -26.66) >DroEre_CAF1 45267 120 + 1 AUUUGCUUGCAGUAUGUCGUAUAUUGCUUGCCACCGAUUUGGCCCCAAUAUUUUGCGCACAUUCCGCUCCCCCCCUCGAUUCUCCAUUCUACAUUCUGAUCGGUUUUCGCAGUACGAACA ..((((..((.(.(((((((((((((...((((......))))..))))))...))).)))).).))..........((....((..((........))..))...))))))........ ( -22.10) >DroYak_CAF1 32601 107 + 1 AUUUGCUUGCUGUAU-----AUAUUGCCUGCCAUCGAUUUGGCCUCAAUAUUUUGUGCCAAUUCCGUUCCCCC--------UUCCAUUCUACAUUCUGAUCGGUUUUCGCAAUACGCACA .......(((.((((-----((((((...((((......))))..))))))....(((.((..(((.((....--------................)).)))..)).)))))))))).. ( -19.75) >consensus AUUUGCUAGCAGUAU_____AUAUUGCUUGCCACCGAUUUGGCCUCAAUAUUUUGUGCCAAUUCCGCUCCCCUCC______UUCCAUUCAACGUUCUGAUCGGUUUUCGCAAUACGUACA ..((((..(((((((.....))))))).....(((((.(((((..(((....))).)))))..........................((........)))))))....))))........ (-18.88 = -18.92 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:53 2006