Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,079,686 – 4,079,803 |
Length | 117 |
Max. P | 0.778254 |
Location | 4,079,686 – 4,079,803 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.17 |
Mean single sequence MFE | -39.13 |
Consensus MFE | -24.69 |
Energy contribution | -26.45 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.13 |
Mean z-score | -1.92 |
Structure conservation index | 0.63 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778254 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4079686 117 - 20766785 ACAAAGUUGCGGGAAUAUUUACGCGAAUGCGAUUAAAGGCCCAUUAAACGCUUUUCUUG--GGGCAGCACGCUGCUCCCAAGGAGGCGACACUGAAGUGGGUGGAU-CCCCAGCUUCCCC ...((((((.((((.......(((....))).......(((((((...((((((.((((--((((((....)))).)))))))))))).......)))))))...)-))))))))).... ( -47.20) >DroSec_CAF1 61564 117 - 1 GCAAAGUUGCGGGAAUAUUUACGCGAAUGCGAUUAAAGGCCUAUUAAACGCUUUUCCAGAUGGGCAGCGUUCUGCUCCCAAGAAGGCCAUAUUGAAGUGGGAGGAUUCCCCAGCUUC--- ...((((((.((((((.((..(((.....((((....(((((.....(((((..(((....))).)))))(((.......))))))))..))))..)))..)).)))))))))))).--- ( -37.40) >DroSim_CAF1 69736 120 - 1 GCAAAGUUGCGGGAAUAUUUACGCGAAUGCGAUUAAAGGCCCAUUAAACGCUUUUCCAGAUGGGCAGCGUUCUGCUCCCAGGAAGGCGAGAUUGAAGUGGGUGGAUUCCCCAGCUUCCUC ...((((((.((((((.....(((....))).......(((((((...((((((((....((((.(((.....))))))))))))))).......)))))))..)))))))))))).... ( -42.50) >DroYak_CAF1 65856 102 - 1 ACAAAGUUGCCGAAAAAUUUACGCGUAAGCGAUUGAAGGCCCAUUAAACGCUAUGCCACAUGGGCAGCGUGCU------------------UUCAAGUGGUUGGUUCCCCCAGCUUCCUC ...((((((..(((....((((((....))..((((((((.......(((((..(((.....)))))))))))------------------)))))))))....)))...)))))).... ( -29.41) >consensus ACAAAGUUGCGGGAAUAUUUACGCGAAUGCGAUUAAAGGCCCAUUAAACGCUUUUCCAGAUGGGCAGCGUGCUGCUCCCAAGAAGGCGA_AUUGAAGUGGGUGGAUUCCCCAGCUUCCUC ...((((((.((((((.....(((((((((........(((((((.............))))))).)))))).(((........))).........))).....)))))))))))).... (-24.69 = -26.45 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:34 2006