Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,079,448 – 4,079,566 |
Length | 118 |
Max. P | 0.786097 |
Location | 4,079,448 – 4,079,566 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.93 |
Mean single sequence MFE | -34.12 |
Consensus MFE | -26.56 |
Energy contribution | -25.80 |
Covariance contribution | -0.76 |
Combinations/Pair | 1.19 |
Mean z-score | -1.92 |
Structure conservation index | 0.78 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786097 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4079448 118 + 20766785 UUAUUAUUUAAUUCCAGCUUUUGUUUUAUGGCUCGAGCUGCCUUUAACUGCGGCAUUACGAUUUUUAUGUCGAUUGGA--AGAUGGCGCAUUAGCGGCAUAAAACGGGCCGUGAGCAUUA .....................(((((.((((((((...((((.((((.((((.((((.(((((........)))))..--.)))).)))))))).)))).....)))))))))))))... ( -35.10) >DroSec_CAF1 61331 117 + 1 UUAUUAUUUAAUUCCAGCUUUUGU-UUAUGACUUGAGUCGCCUUUAACUGCGGCAUUCCGAUUUUUAUGUCGAUUGGA--AGAUGGCGCAUUAGCGGCAUAAAACGGGCCGUGAGCAUUA .....................(((-(((((.((((.(((((........))))).((((((((........)))))))--).(((.(((....))).)))....)))).))))))))... ( -32.10) >DroSim_CAF1 69502 118 + 1 UUAUUAUUUAAUUCCAGCUUUUGUUUUAUGACUCGAGUCGCCUUUAACUGCGGCAUUACGAUUUUUAUGUCGAUUGGA--AGAUGGCGCAUUAGCGGCAUAAAACGGGCCGUGAGCAUUA ................((((((((((((((((....)))(((.((((.((((.((((.(((((........)))))..--.)))).)))))))).)))))))))))).....)))).... ( -30.70) >DroEre_CAF1 62542 117 + 1 UUAUUAUUUAAUUCCAGCUUCUGU-UUAUGGCUCGAGCUGCCUUUAACUGCGGCAUUACGAUUUUUAUGUCGAUUGGA--AGACGGCGCAUUAGCGGCAUAAAACGAGCCGUGAGCAUUA .....................(((-((((((((((.(((((........)))))........(((((((((.......--.)))(.(((....))).))))))))))))))))))))... ( -38.40) >DroYak_CAF1 65622 120 + 1 UUAUUAUUUAAUUCCAGCUUUUGUUUUAUGACUCGAGCUGCACUUAACUGCGGCAUUACGAUUUUUAUGUCGAUGGGAUCCGAUGGCGCAUUAGCGGCAUAAAACGGGCUGUGAGCAUUA ...........((((((((..(((((((((.((((.((((((......))))))....((((......)))).)))).........(((....))).)))))))))))))).)))..... ( -34.30) >consensus UUAUUAUUUAAUUCCAGCUUUUGUUUUAUGACUCGAGCUGCCUUUAACUGCGGCAUUACGAUUUUUAUGUCGAUUGGA__AGAUGGCGCAUUAGCGGCAUAAAACGGGCCGUGAGCAUUA .....................(((.(((((.((((.(((((........)))))....((((......))))..........(((.(((....))).)))....)))).))))))))... (-26.56 = -25.80 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:33 2006