Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,077,633 – 4,077,753 |
Length | 120 |
Max. P | 0.875661 |
Location | 4,077,633 – 4,077,753 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.67 |
Mean single sequence MFE | -36.18 |
Consensus MFE | -28.22 |
Energy contribution | -27.94 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.15 |
Mean z-score | -1.96 |
Structure conservation index | 0.78 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875661 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4077633 120 + 20766785 UAUAGGCAGAGGUGUCUCGUGUGGAACACCUUUCCUCUUCCAAUAUGAGAAGAUUUUUAUAUGCAAACUGUAGGCCAAGCCCAAAACCACGCCCACAAGGGCGAUUGUAAACAACAUUGC ....((.((((((((..(....)..))))))))))((((((.....).)))))........(((((......(((...)))........(((((....))))).)))))........... ( -32.40) >DroSec_CAF1 60398 120 + 1 UAUGGGCAGAGGUUUCUCGUGCGGAACACCUUUCCUCUUCCAAUAUGAGAAGAUUUUUAUAUGCAAACUGUAGGCCAAGGCCAAAACCGCGCCCACAAGGGCGAUUGUAAACAGCAUUGC ..((((.(((((......(((.....)))....)))))))))((((((((....))))))))((((.((((.(((....)))...((..(((((....)))))...))..))))..)))) ( -36.30) >DroSim_CAF1 68604 120 + 1 UAUGGGCAGAGGUUUCUCGUGCGGAACACCUUUCCUCUUCCAAUAUGAGAAGAUUUUUAUAUGCAAACUGUAGGCCAAGGCCAAAACCGCGCCCACAAGGGCGAUUGUAAACAGCAUUGC ..((((.(((((......(((.....)))....)))))))))((((((((....))))))))((((.((((.(((....)))...((..(((((....)))))...))..))))..)))) ( -36.30) >DroEre_CAF1 61717 120 + 1 UAGCGGCAGUGGCCUCUCGUGUGGAACUCCUUUCCUCUUCCAAUAAGAGAAGAUUUUCACAUGCAAACUGUAGGCCAAGGCCAGGACCACGCCCAAAAGGGCGAUUGUAAAAAGCAUUGC ..(((((..(((((((.(((((((((.((.....(((((.....)))))..)).)))))))))......).))))))..))).......(((((....)))))..........))..... ( -42.00) >DroYak_CAF1 64682 120 + 1 CAGAGGCAGAGGUUUCUCGUGUGGAACACCUUUCUUCUUCCAAUAAGAGAAGAUUUUAACAUGCAAACUGUAGGCCAAGGCCAAGACCACGCCCAAAAGGGCGAUUGUAAACAGCAUUGC .(((((.((((((((((.....)))).))))))))))).....(((((.....)))))....((((.((((.(((....))).......(((((....))))).......))))..)))) ( -33.90) >consensus UAUAGGCAGAGGUUUCUCGUGUGGAACACCUUUCCUCUUCCAAUAUGAGAAGAUUUUUAUAUGCAAACUGUAGGCCAAGGCCAAAACCACGCCCACAAGGGCGAUUGUAAACAGCAUUGC ....(((...((((((...(((((((.....))))((((((.....).))))).........)))....).)))))...))).......(((((....)))))................. (-28.22 = -27.94 + -0.28)
Location | 4,077,633 – 4,077,753 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.67 |
Mean single sequence MFE | -36.98 |
Consensus MFE | -29.10 |
Energy contribution | -29.94 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.03 |
Mean z-score | -1.50 |
Structure conservation index | 0.79 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604271 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4077633 120 - 20766785 GCAAUGUUGUUUACAAUCGCCCUUGUGGGCGUGGUUUUGGGCUUGGCCUACAGUUUGCAUAUAAAAAUCUUCUCAUAUUGGAAGAGGAAAGGUGUUCCACACGAGACACCUCUGCCUAUA ((((...(((..((...(((((....)))))..))...((((...)))))))..)))).........((((((......))))))((..((((((..(....)..))))))...)).... ( -35.10) >DroSec_CAF1 60398 120 - 1 GCAAUGCUGUUUACAAUCGCCCUUGUGGGCGCGGUUUUGGCCUUGGCCUACAGUUUGCAUAUAAAAAUCUUCUCAUAUUGGAAGAGGAAAGGUGUUCCGCACGAGAAACCUCUGCCCAUA ((((.(((((..((...(((((....)))))..))...(((....))).))))))))).........((((((......))))))((((.....))))(((.(((....))))))..... ( -37.40) >DroSim_CAF1 68604 120 - 1 GCAAUGCUGUUUACAAUCGCCCUUGUGGGCGCGGUUUUGGCCUUGGCCUACAGUUUGCAUAUAAAAAUCUUCUCAUAUUGGAAGAGGAAAGGUGUUCCGCACGAGAAACCUCUGCCCAUA ((((.(((((..((...(((((....)))))..))...(((....))).))))))))).........((((((......))))))((((.....))))(((.(((....))))))..... ( -37.40) >DroEre_CAF1 61717 120 - 1 GCAAUGCUUUUUACAAUCGCCCUUUUGGGCGUGGUCCUGGCCUUGGCCUACAGUUUGCAUGUGAAAAUCUUCUCUUAUUGGAAGAGGAAAGGAGUUCCACACGAGAGGCCACUGCCGCUA ..................((((....))))(((((..(((((((.((.........)).((((....((((((......))))))((((.....)))).)))).)))))))..))))).. ( -39.90) >DroYak_CAF1 64682 120 - 1 GCAAUGCUGUUUACAAUCGCCCUUUUGGGCGUGGUCUUGGCCUUGGCCUACAGUUUGCAUGUUAAAAUCUUCUCUUAUUGGAAGAAGAAAGGUGUUCCACACGAGAAACCUCUGCCUCUG ((((.(((((..((...(((((....)))))..))...(((....))).))))))))).........((((((((....)).))))))...(((.....)))(((....)))........ ( -35.10) >consensus GCAAUGCUGUUUACAAUCGCCCUUGUGGGCGUGGUUUUGGCCUUGGCCUACAGUUUGCAUAUAAAAAUCUUCUCAUAUUGGAAGAGGAAAGGUGUUCCACACGAGAAACCUCUGCCCAUA ((((.(((((..((...(((((....)))))..))...(((....))).))))))))).........((((((......))))))((..((((.(..(....)..).))))...)).... (-29.10 = -29.94 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:32 2006