Locus 946

Sequence ID 2R_DroMel_CAF1
Location 4,077,195 – 4,077,315
Length 120
Max. P 0.648133
window1693

overview

Window 3

Location 4,077,195 – 4,077,315
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.33
Mean single sequence MFE -30.54
Consensus MFE -25.21
Energy contribution -26.13
Covariance contribution 0.92
Combinations/Pair 1.08
Mean z-score -1.44
Structure conservation index 0.83
SVM decision value 0.24
SVM RNA-class probability 0.648133
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4077195 120 + 20766785
ACAUCCGUGGUAAACCGGGCACAGAGAUCCUUAAUCUCCACAUUACCCUCCUCCACUUUGGCCUCCUUCACCGCCUUGUCCAUGGCAUCGCCCAGGCGAAGACCCACGUCCACGAUCACC
.....(((((......(((((..(((((.....))))).....................(((..........))).)))))..(((.((((....)))).).)).....)))))...... ( -28.50)
>DroSec_CAF1 59958 120 + 1
ACAUCCGUGGUGAACCGAGCACAUAGAUCCUUGAUCUCCACAUUACCGUCCUCCACUUUGGCCUCCUUCACCGCCUUGUCCAUGGCAUCGCCCAGGCGAACACCCACUUCCACGAUCACC
.....(((((((((..(((.....(((((...)))))..........(.((........)))))).))))))(((........))).((((....))))............)))...... ( -25.10)
>DroSim_CAF1 68164 120 + 1
ACAUCCGUGGUGAACCGGGCACAUAGAUCCUUGACCUCCACAUUACCGUCCUCCACUUUGGCCUCCUUCACCGCCUUGUCCAUGGCAUCGCCCAGGCGAAGACCCACGUCCACGAUCACC
.....(((((((((..((((.((.((......(((............))).....)).))))))..))))))(((........))).((((....)))).(((....))).)))...... ( -30.00)
>DroEre_CAF1 61277 120 + 1
ACAUCCGUGGUGAACCGGGCACAGAGGUCCUUGAUCUCCACAUUACCGUCCUCCACUUGGGCCUCCUGCACCGCCUUAUCCAUGGCAUCGCCCAGGCGAAGACCCACGUCCACGAUCACC
.....(((((((....(((((..(((((((..(......((......))......)..))))))).))).))(((........))).((((....)))).......)).)))))...... ( -37.00)
>DroYak_CAF1 64242 120 + 1
ACAUCUGUGGUGAACCGGGCACAGAGAUCCUUGAUCUCCACAUUGCCGCCCUCCACUUUGGCCUCCUUUACCGCCUUAUCCAUGGCAUCGCCCAGGCGAAGACCCACGUCCACGAUCACC
........(((((...((((...((((((...))))))....((((((((.........)))..........(((........)))........))))).).))).((....)).))))) ( -32.10)
>consensus
ACAUCCGUGGUGAACCGGGCACAGAGAUCCUUGAUCUCCACAUUACCGUCCUCCACUUUGGCCUCCUUCACCGCCUUGUCCAUGGCAUCGCCCAGGCGAAGACCCACGUCCACGAUCACC
.....(((((((((..((((.(((((.............................)))))))))..))))))(((........))).((((....))))............)))...... (-25.21 = -26.13 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:30 2006