Locus 945

Sequence ID 2R_DroMel_CAF1
Location 4,076,795 – 4,076,915
Length 120
Max. P 0.910697
window1692

overview

Window 2

Location 4,076,795 – 4,076,915
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.00
Mean single sequence MFE -49.53
Consensus MFE -44.78
Energy contribution -44.90
Covariance contribution 0.12
Combinations/Pair 1.18
Mean z-score -1.43
Structure conservation index 0.90
SVM decision value 1.07
SVM RNA-class probability 0.910697
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4076795 120 - 20766785
GCGGAGGACCAAGAAGCUGCCAAAAAGGGUCAGGGUAUCGAUCUCUCCCACGGCCUGACCCUGGAGCAAAUGGCUGCCCAGGCCUUCGUGUUCUUUGUGGCCGGCUUCGAGACAUCCUCC
..((((((....((((((((((...(((((((((...(((..........))))))))))))((((((...((((.....))))....))))))...))).)))))))......)))))) ( -51.90)
>DroSec_CAF1 59558 120 - 1
GCGGAGGACCAAGAAGCUGCCAAGAAGGGUAAGGGUAUCGAUCUCUCCCACGGCCUGACCCUGGAGCAAAUGGCUGCCCAGGCCUUCGUGUUCUUCGUGGCCGGCUUCGAGACCUCUUCC
..(((((.....((((((((((.((((..((.(((...........)))..((((((.....(((((.....))).))))))))....))..)))).))).)))))))....)))))... ( -47.90)
>DroSim_CAF1 67764 120 - 1
GCGGAGGACCAAGAAGCUGCCAAGAAGGGCCAGGGUAUCGAUCUCUCCCACGGCCUGACCCUGGAGCAAAUGGCUGCCCAGGCCUUCGUGUUCUUCGUGGCCGGCUUCGAGACCUCCUCC
..(((((.....((((((((((.((((((((.(((...........)))..((((((.....(((((.....))).))))))))...).))))))).))).)))))))....)))))... ( -52.10)
>DroEre_CAF1 60877 120 - 1
GCGGAGGACCAGGAGGCGGCUAGGAAGGGUCAGGGCAUCGAUCUCUCCCACGGCUUGACCCUGGAGCAAAUGGCUGCCCAGGCCUUCGUCUUCUUCGUGGCUGGCUUCGAGACCUCCUCC
..(((((.(..((((.((((((.(((((((((((.(...............).)))))))))((((.....((((.....)))).....)))).)).)))))).))))..).)))))... ( -51.46)
>DroYak_CAF1 63842 120 - 1
GCGGAGGACCAAGAAGCUGCCAAAAAGGGCCGGGGUAUCGAUCUCUCCCACGGCCUGACCCUGGAGCAAAUGGCUGCUCAGGCCUUUGUGUUCUUCGUGGCUGGAUUCGAGACCUCUUCC
(((((((((((((..(((.(((....(((((((((...........))).)))))).....))))))....((((.....)))))))).)))))))))((((.(...).)).))...... ( -44.30)
>consensus
GCGGAGGACCAAGAAGCUGCCAAGAAGGGUCAGGGUAUCGAUCUCUCCCACGGCCUGACCCUGGAGCAAAUGGCUGCCCAGGCCUUCGUGUUCUUCGUGGCCGGCUUCGAGACCUCCUCC
..((((((....((((((((((.(((((((((((.(...((....))....).)))))))))((((((...((((.....))))....)))))))).)))).))))))......)))))) (-44.78 = -44.90 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:29 2006