Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,073,960 – 4,074,066 |
Length | 106 |
Max. P | 0.634246 |
Location | 4,073,960 – 4,074,066 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.78 |
Mean single sequence MFE | -19.01 |
Consensus MFE | -14.29 |
Energy contribution | -14.01 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.13 |
Mean z-score | -1.66 |
Structure conservation index | 0.75 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634246 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4073960 106 + 20766785 AAUCUAAAAAUGCCUUUACCCUCAAUGC-UUUCCGCAUCGGCCAGCUAAUAUUUCC------CUAUAAUUUAUAUGGCCGCCCGGGGAAAACAUCCAGCAAACAACA-------UAAAUA .........................(((-(..(((...((((((..(((.......------.......)))..))))))..)))(((.....))))))).......-------...... ( -19.14) >DroSec_CAF1 56644 97 + 1 AAUCUAAAAAUGCCAU---------UGC-CUUUCGCAUCGGCCAGCUAAUAUUUCC------CUAUAAUUUAUAUGGCCGCCCGGGGAAAACAUCCAGCAAACAACA-------UAAAUA ...............(---------(((-...(((...((((((..(((.......------.......)))..))))))..)))(((.....))).))))......-------...... ( -16.34) >DroSim_CAF1 64863 97 + 1 AAUCUAAAAAUGCCAU---------UGC-CUUUCGCAUCGGCCAGCUAAUAUUUCC------CUAUAAUUUAUAUGGCCGCCCGGGGAAAACAUCCAGCAAACAACA-------UAAAUA ...............(---------(((-...(((...((((((..(((.......------.......)))..))))))..)))(((.....))).))))......-------...... ( -16.34) >DroEre_CAF1 58098 113 + 1 GAUCUAAAAAUGCCUUUGCAUUCAAUGUUUUUCCGCAUCGGCCAGCUAAUAUUCUAUAUAAUGUAUAAUGUAUAUGGUCGCCCGGGGAAAACAUCCAGCAAACAACA-------UAAAUA .........(((..(((((.....((((((((((....((((((....((((..(((((...)))))..)))).))))))....))))))))))...)))))...))-------)..... ( -25.00) >DroYak_CAF1 61000 114 + 1 AAUCUAAAAAUGCCUUUGCAUUCAAUGCUUUUCCGCAUCGGCCAGCUAAUAUUUUC------CUAUAAUUUAUAUGGUCGCCCAGGGAAAACAUCCAGCAAACAACAACAACAGCAAAUA ..............(((((.....(((.((((((....((((((..(((.......------.......)))..))))))....)))))).)))...))))).................. ( -18.24) >consensus AAUCUAAAAAUGCCUUU_C__UCAAUGC_UUUCCGCAUCGGCCAGCUAAUAUUUCC______CUAUAAUUUAUAUGGCCGCCCGGGGAAAACAUCCAGCAAACAACA_______UAAAUA ..........(((...................(((...((((((..............................))))))..)))(((.....))).))).................... (-14.29 = -14.01 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:17 2006