Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,345,476 – 1,345,596 |
Length | 120 |
Max. P | 0.999741 |
Location | 1,345,476 – 1,345,596 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.56 |
Mean single sequence MFE | -38.70 |
Consensus MFE | -33.08 |
Energy contribution | -34.12 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.03 |
Mean z-score | -3.31 |
Structure conservation index | 0.85 |
SVM decision value | 3.98 |
SVM RNA-class probability | 0.999741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1345476 120 + 20766785 GGUCUGCCAAAUCCGCAACCCUCCCACCGGCCUAAAUAUUAGUUCAAUAGUCAUGACUGUCCAACUGAUGCUCCAAAUCCCCUGGGGUCAGCCCAAAAGCUGGCCCAGCCACGCACACAC ((..(((.......)))..)).......(((.....((((((((..(((((....)))))..))))))))..............((((((((......)))))))).))).......... ( -34.80) >DroSec_CAF1 63748 120 + 1 GGUCUGCCAAAUCCGCAACCCUCCCACCGGCCUGGAUAUUAGUUCAAUAGUCAUGACUGUCCAACUGAUGCUCCAAAUCCCCUGGGGUCAGCCCGAGAGCUGGCCCAGCCACGCACACAC ((..(((.......)))..)).......(((.((((((((((((..(((((....)))))..)))))))).)))).........((((((((......)))))))).))).......... ( -40.30) >DroSim_CAF1 41941 120 + 1 GGUCUGCCAAAUCCGCAACCCUCCCACCGGCCUGGAUAUUAGUUCAAUAGUCAUGACUGUCCAACUGAUGCUCCAAAUCCCCUGGGGUCAGCCCGAAAGCUGGCCCAGCCACGCACACAC ((..(((.......)))..)).......(((.((((((((((((..(((((....)))))..)))))))).)))).........((((((((......)))))))).))).......... ( -40.30) >DroEre_CAF1 45043 116 + 1 G-UCUGCCAAAUCCGCAGCCCUCCCACCGGCCUGGAUAUUAGUUCAAUAGUCAUGACUGUCCAACUGAUGCCCCAAAUCCCCUGAGGUCAGCCCCAAUGCUGGCCAGGCCACACACG--- .-.((((.......))))..........(((((((.((((((((..(((((....)))))..)))))))).))............(((((((......)))))))))))).......--- ( -37.90) >DroYak_CAF1 32376 117 + 1 GGUCUGCCAAAACCGCAACCCUCCCACCGGUUUGGAUAUUAGUUCAAUAGUCAUGACUGUCCAACUGAUGCUCCAAAUCCCCUGGGGUCAGCCCGAAAGCUGGCCAAGCCACACACA--- ((..(((.......)))..))..(((..((((((((((((((((..(((((....)))))..)))))))).))))))))...)))(((((((......)))))))............--- ( -40.20) >consensus GGUCUGCCAAAUCCGCAACCCUCCCACCGGCCUGGAUAUUAGUUCAAUAGUCAUGACUGUCCAACUGAUGCUCCAAAUCCCCUGGGGUCAGCCCGAAAGCUGGCCCAGCCACGCACACAC ((..(((.......)))..)).......(((.((((((((((((..(((((....)))))..)))))))).)))).........((((((((......)))))))).))).......... (-33.08 = -34.12 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:52 2006