Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,070,793 – 4,070,898 |
Length | 105 |
Max. P | 0.967661 |
Location | 4,070,793 – 4,070,898 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.62 |
Mean single sequence MFE | -39.80 |
Consensus MFE | -29.44 |
Energy contribution | -31.00 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.09 |
Mean z-score | -2.74 |
Structure conservation index | 0.74 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967661 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4070793 105 - 20766785 AACUUAAGAGAGUCCCUCCUAUCGCUUAAGAGAUGUAACCGUAGGUGGAAAGUA---------------GCACGUGUUGCACGGCUUUCGCUUUCAUCUGCGCAGCAUCUCUGUUAAAAU ....((((.((..........)).))))((((((((...((((((((.((((((---------------((.((((...)))))))...)))))))))))))..))))))))........ ( -33.90) >DroSec_CAF1 53456 120 - 1 GACUUAAGAGAGCCCCUGCCUUCGCUUAAGAGAUGAAACCGUAGGCGGAAAGUAACUCCUGGCAACGCAGCACGUGUUGCACGGCUUUCGCUUUCAUCUGCGCAGCAUCUCUGUUAAAAU ...((((.((((...(((((((.....)))((((((((.((.(((((((.......)))..(((((((.....)))))))...)))).)).))))))))..))))...)))).))))... ( -39.20) >DroSim_CAF1 61635 120 - 1 GACUUAAGAGAGUCCCUGCCUUCGCUUAAGAGAUGAAACCGUAGGCGGAAAGUAACUCCUGGCAACGCAGCACGUGUUGCACGGCUUUCGCUUUCAUCUGCGCAGCAUCUCUGUUAAAAU ...((((.((((...(((((((.....)))((((((((.((.(((((((.......)))..(((((((.....)))))))...)))).)).))))))))..))))...)))).))))... ( -39.90) >DroEre_CAF1 54812 115 - 1 GACUUAAGAGAGCCCC-----UCGCUCAAGAGAUGUAACCGCAGGUUGAAAGUAACUCCUGGCAACGCAGCACGUGUUGCACGGCUUUCGCUUUCAUCUGCGCAGCAUCUCUGCUAAAAU .........((((...-----..)))).((((((((...(((((((.((((((.....((((((((((.....))))))).))).....)))))))))))))..))))))))........ ( -45.50) >DroYak_CAF1 57419 115 - 1 GACUUAAGAGAGUUCC-----UCGCUUAAGAGAUGAAACCGCAGGCUGUAAGUAACUCCUGGCAACGCAGCACGUGUUGCACGGCUUUCGCUUUCAUCUGCGCAGCAUCUCUGCUAAAAU ..((((((.(((...)-----)).))))))((((((((.((.(((((((.((......)).(((((((.....)))))))))))))).)).))))))))..((((.....))))...... ( -40.50) >consensus GACUUAAGAGAGUCCCU_C__UCGCUUAAGAGAUGAAACCGUAGGCGGAAAGUAACUCCUGGCAACGCAGCACGUGUUGCACGGCUUUCGCUUUCAUCUGCGCAGCAUCUCUGUUAAAAU .........((((..........)))).(((((((....(((((...((((((.....((((((((((.....))))))).))).....))))))..)))))...)))))))........ (-29.44 = -31.00 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:55 2006