Locus 936

Sequence ID 2R_DroMel_CAF1
Location 4,070,405 – 4,070,514
Length 109
Max. P 0.931392
window1656

overview

Window 6

Location 4,070,405 – 4,070,514
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 74.47
Mean single sequence MFE -20.82
Consensus MFE -4.52
Energy contribution -4.84
Covariance contribution 0.32
Combinations/Pair 1.22
Mean z-score -2.00
Structure conservation index 0.22
SVM decision value 1.21
SVM RNA-class probability 0.931392
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4070405 109 - 20766785
AAAUAUCAAUAACUGACCGAGCAAAUACUGGAUGGCUUACAAAAUAUUGAUAUUUAUACAGUUGAGUGGUAGUUAAUGCUUAUUUGGAUAUCC-----------CAAAAAAGCAAUCAAU
.........((((((.(((..((...((((.((((....(((....)))....)))).))))))..))))))))).(((((.(((((.....)-----------)))).)))))...... ( -23.00)
>DroSec_CAF1 53069 109 - 1
AAACAACAAUAACUAACCGAGUAAAUACUGAAUGGCUUAAAAAAUAUUGAUAUUUAUUCGGUUGAGUGGUAGGCAAUGCUUAUUUGGAUAUCC-----------GAAAAAAGGAAUCAAU
......(((..((((((((((((((((.(.((((..........)))).)))))))))))))).))).((((((...)))))))))(((.(((-----------.......))))))... ( -24.00)
>DroSim_CAF1 61248 109 - 1
AAAUAACAAUAACUGACCGAGCAAAUACUGAAUGGCUUAAAAAAUAUUGAUAUUUAUACGGUUGAGUGGUAGGUAAUGCUUAUUUGGAUAUCC-----------GAAAAAAGGAAUCAAU
................(((((((..((((..((.((((((...(((........)))....)))))).)).)))).))))).(((((....))-----------)))....))....... ( -19.30)
>DroEre_CAF1 54425 114 - 1
AAAUAUCAAUAGCUGACCGAGCAAAUAUUGGAUGUCAUCAAAACGAUUGAUAUUUAUGCGUUUGAGUGAUAAGGAAU------UUAAAUACCUUUAACUAACUUAAAAUAAAUAAUCAAU
((((((((((.(((.....))).....((((......))))....)))))))))).....(((((((...((((.((------....)).))))......)))))))............. ( -16.40)
>DroYak_CAF1 57051 93 - 1
AAAUAUCAAUAACUCACCGAUCAAAUGUUGGAUGGU---------AUUGAUAUUUAUACGGUUGAGUGAUAAGUAAU------UCAAAUAACC-----------AAAAUUAAGGAUCAA-
(((((((((((.(.(((((((.....))))).))))---------))))))))))....(((((..(((........------)))..)))))-----------...............- ( -21.40)
>consensus
AAAUAUCAAUAACUGACCGAGCAAAUACUGGAUGGCUUAAAAAAUAUUGAUAUUUAUACGGUUGAGUGGUAGGUAAUGCUUAUUUGGAUAUCC___________AAAAAAAGGAAUCAAU
...........((((((((...(((((.(.((((..........)))).))))))...))))).)))..................................................... ( -4.52 =  -4.84 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:54 2006