Locus 932

Sequence ID 2R_DroMel_CAF1
Location 4,068,170 – 4,068,290
Length 120
Max. P 0.952240
window1646

overview

Window 6

Location 4,068,170 – 4,068,290
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.92
Mean single sequence MFE -33.48
Consensus MFE -28.34
Energy contribution -28.30
Covariance contribution -0.04
Combinations/Pair 1.22
Mean z-score -1.78
Structure conservation index 0.85
SVM decision value 1.42
SVM RNA-class probability 0.952240
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4068170 120 + 20766785
UAAUGGCAGCGACACUCAGCAGAAGUGCUCAUCGCGAGGCAGGAUCGCAAAAUUAGCGGCUCUGUGAAAAACUCACAUAAUUUCGCAGACAAAAAGUUUGCACAUUAUCGCGAAUUUAUU
..........(((((((....).)))).)).((((((.((((..((((.......))))..))))...................((((((.....))))))......))))))....... ( -31.90)
>DroSec_CAF1 50818 120 + 1
UAAUGGCCGCGACACUCGGCAGAAGUGCUCAUCGCGCGGCGGGAUCGCAAAAUUAGCGGCUCUGUGAAAAACUCACACAAUUUCGCAGACAAAAAGUUUGCACAUUAUCGCGAAAUUAUU
(((((((((((......((((....)))).....))))))(((.((((.......)))))))(((((.....))))).......((((((.....)))))).)))))............. ( -36.00)
>DroSim_CAF1 59024 120 + 1
UAAUGGCAGCGACACUCGGCAGAAGUGCUCAUCGCGCGGCGGGAUCGCAAAAUUAGCGGCUCUGUGAAAAACUCACACAAUUUCGCAGACAAAAAGUUUGCACAUUAUCGCGAAUUUAUU
........((((..((((.(....((((.....)))).))))).)))).(((((.((((...(((((.....))))).......((((((.....))))))......)))).)))))... ( -32.30)
>DroEre_CAF1 52257 118 + 1
UAAUGGCAGAGACACUCACCAGAAGUGCUCAUCGCGGGACGGGAACGCAAAAUUAGCGGCUCUGCGAAAAACUCA--CAAUUUAGCACACAAGAAGUUUGCACAGUUUCGCGAAUUUAUU
........(((.(((((....).))))))).(((((..(((((..(((.......)))..)))............--.......(((.((.....)).)))...))..)))))....... ( -30.40)
>DroYak_CAF1 54842 120 + 1
UAAUGGCAGCGGCACUCAGCAGAAGUGCUCAUCGCGAGAUGGGAACGCAAAAUUAGCGGCUCCGUGAAAAACUCACACAAUUUUGCAGACAAAAAGUUUGCACAUUAUCGCGAAUUUAUU
..........(((((((....).))))))..(((((((((((((.(((.......)))..)))((((.....)))).......(((((((.....))))))))))).))))))....... ( -36.80)
>consensus
UAAUGGCAGCGACACUCAGCAGAAGUGCUCAUCGCGAGGCGGGAUCGCAAAAUUAGCGGCUCUGUGAAAAACUCACACAAUUUCGCAGACAAAAAGUUUGCACAUUAUCGCGAAUUUAUU
..........(((((((....).)))).)).((((((.(((((..(((.......)))..)))))...................((((((.....))))))......))))))....... (-28.34 = -28.30 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:45 2006