Locus 930

Sequence ID 2R_DroMel_CAF1
Location 4,067,684 – 4,067,786
Length 102
Max. P 0.988172
window1643

overview

Window 3

Location 4,067,684 – 4,067,786
Length 102
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 74.85
Mean single sequence MFE -32.85
Consensus MFE -22.73
Energy contribution -23.21
Covariance contribution 0.48
Combinations/Pair 1.08
Mean z-score -1.94
Structure conservation index 0.69
SVM decision value 2.11
SVM RNA-class probability 0.988172
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4067684 102 + 20766785
CCAACCACGGCAAAUGCAAAUAUUUGCGAUGUUUCGCCGACACGUUGGGCGGGGCACUCCUCCGGCAGCUCCUCC---------AGCUGCUCCAUC------UCCAGAUCUCCCGUG
(((((..((((....((((....))))((....))))))....)))))((((((.........(((((((.....---------)))))))..(((------....))).)))))). ( -34.20)
>DroSec_CAF1 50254 96 + 1
CCAACCACGGCAAAUGCAAAUAUUUGCGAUGUUUCGCCGAAACGUUGGGCGGGGCACUCCUCCAGCU---------------------GCUCCAGCUCCUGCUCAGCCUCUCNNNNN
.......((((....((((....))))((....))))))....((((((((((..........((((---------------------(...))))))))))))))).......... ( -29.50)
>DroSim_CAF1 58512 117 + 1
CCAACCACGGCAAAUGCAAAUAUUUACGAUGUUUCGCCGACACGUUGGCCGGAGCACUCCUCCGGCAGCUCCUCCAGCCCCUCCAGCUGCUCCAGCUCCUGCUCCAGCUCUCCCGUG
.....(((((.....((..................(((((....))))).((((((...((..(((((((..............)))))))..))....)))))).))....))))) ( -34.84)
>consensus
CCAACCACGGCAAAUGCAAAUAUUUGCGAUGUUUCGCCGACACGUUGGGCGGGGCACUCCUCCGGCAGCUCCUCC_________AGCUGCUCCAGCUCCUGCUCCAGCUCUCCCGUG
(((((..((((....((((....))))((....))))))....)))))..((((.....))))(((((((..............))))))).......................... (-22.73 = -23.21 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:42 2006