Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,345,226 – 1,345,338 |
Length | 112 |
Max. P | 0.927885 |
Location | 1,345,226 – 1,345,338 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 78.23 |
Mean single sequence MFE | -21.64 |
Consensus MFE | -18.60 |
Energy contribution | -18.23 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.11 |
Mean z-score | -1.72 |
Structure conservation index | 0.86 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.927885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1345226 112 - 20766785 AUCUGCAUCAGCCAGAAUGCGGGCUAAUUGGCUGUCCUCAAAGGGCGGGCAUUUCCCUUUCUACAUUUCGCCCUUUCUCCCAUUCUUCCAUUCUCGCUUUCUCCUCUUCAGC .........(((.((((((.((((.........))))..((((((((((.................))))))))))............)))))).))).............. ( -24.73) >DroSec_CAF1 63527 104 - 1 AUCUGCAUCAUCCAGAAUGCGGGCUAAUUGGCUGUCCUCAAAGGGCGGGCCUUUCCCAU--------UCUCCCAUUCUCCUUUUCUCCCAUUCUCGCUUUCUCCUCUUCAGC ..(((........((((.(((((.....(((..((((.....))))(((.....)))..--------....................)))..))))).))))......))). ( -20.24) >DroSim_CAF1 41712 112 - 1 AUCUGCAUCAUCCAGAAUGCGGGCUAAUUGGCCGUCCUCAAAGGGCGGGCCUUUCCCUUUCUACGUUUCUCCCAUUCUCCCUUUCUCCCAUUCUCGCUUUCUCCUCUUUAGC .............((((.(((((((....))))((((.....))))(((.....))).....................................))).)))).......... ( -20.20) >DroEre_CAF1 44795 88 - 1 AUCUGCAUCACCCAGAAUGCGGGCUAAUUAGCUGUCCACAAAGGGCGGGCCUUUCCCCUUC------------------------CCGCUUCAUCGCUUUCUCCUGCUCACC ..............(((.(((((..........((((.....))))(((......)))..)------------------------)))))))...((........))..... ( -21.40) >consensus AUCUGCAUCAUCCAGAAUGCGGGCUAAUUGGCUGUCCUCAAAGGGCGGGCCUUUCCCUUUC______UCUCCCAUUCUCCCUUUCUCCCAUUCUCGCUUUCUCCUCUUCAGC .............((((.(((((((....))))((((.....))))(((.....))).....................................))).)))).......... (-18.60 = -18.23 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:48 2006