Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,066,465 – 4,066,585 |
Length | 120 |
Max. P | 0.548362 |
Location | 4,066,465 – 4,066,585 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.50 |
Mean single sequence MFE | -15.56 |
Consensus MFE | -12.26 |
Energy contribution | -12.50 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.44 |
Structure conservation index | 0.79 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4066465 120 + 20766785 CAUUAUCUUCAUCGAGCAUAAACAGACGGCACAUUUAAUUAAUUUUGUAAAUUAAAACAAAAUAUUCAAUUUGCACCGAAUGCAAAUCGAAACAAUUAAACUACAUUGCAUAAUAAUCUC ..(((((((....))).)))).......(((..(((((((.(((((((........))))))).(((.(((((((.....))))))).)))..)))))))......)))........... ( -15.10) >DroSec_CAF1 49010 120 + 1 UAUUAUCUUCAUCGCGCAUAAACAGACGACACAUUUAAUUAAUUUUGUAAAUUAAAACAAAAUAUUCAAUUUGCACCGAAUGCAAAUCGAAACAAUUACACUUCAUUGCAUUAUAAUCUC ...............(((.......................(((((((........))))))).(((.(((((((.....))))))).)))...............)))........... ( -14.50) >DroSim_CAF1 57249 120 + 1 UAUUAUCUUCAUCGCGCAUAAACAGACGGCACAUUUAAUUAAUUUUGUAAAUUAAAACAAAAUAUUCAAUUUGCACCGAAUGCAAAUCGAAACAAUUAAACUACAUUGCAUUAUAAUCUC .............((((...........))...(((((((.(((((((........))))))).(((.(((((((.....))))))).)))..))))))).......))........... ( -16.20) >DroEre_CAF1 50332 119 + 1 GAUUAUCUUCAUCGCGCAUAAACAGACGGCACAUUUAAUUAAUUUUGUAAAUUAAAACCAAAUAUUCAAUUUGCUCCGAAUGCAAAUCGA-ACAAUUACACUACAUUGCAUUAUAAUAUC ...............(((.........((....(((((((.........))))))).)).....(((.((((((.......)))))).))-)..............)))........... ( -11.60) >DroYak_CAF1 53116 114 + 1 UAUUA------UCGCGCAUAAACAGAUGGCACGUUUAAUUAAUUUUGUAAAUUAAAACAAAAUAUUUCAUUUGCUUUGAAUGCAAAUCGAAACAAUUAAACUACACUGCAUUAUAAUGUC (((((------(.((.(((......)))))..((((((((.(((((((........))))))).((((((((((.......)))))).)))).))))))))...........)))))).. ( -20.40) >consensus UAUUAUCUUCAUCGCGCAUAAACAGACGGCACAUUUAAUUAAUUUUGUAAAUUAAAACAAAAUAUUCAAUUUGCACCGAAUGCAAAUCGAAACAAUUAAACUACAUUGCAUUAUAAUCUC ...............(((.......................(((((((........))))))).(((.((((((.......)))))).)))...............)))........... (-12.26 = -12.50 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:38 2006