Locus 927

Sequence ID 2R_DroMel_CAF1
Location 4,066,264 – 4,066,354
Length 90
Max. P 0.931718
window1638

overview

Window 8

Location 4,066,264 – 4,066,354
Length 90
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.58
Mean single sequence MFE -16.64
Consensus MFE -16.28
Energy contribution -16.28
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.98
SVM decision value 1.22
SVM RNA-class probability 0.931718
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4066264 90 - 20766785
UGAUUUCGCCCAUAAAAUUUACGCCUUUUGUUAUUAAACUUUAAGCUGCCCAAAAGCCAAUCAAAAGUGUGUAAAACUUCUAAGGCACAC------------------------------
.......(((.......((((((((((((((((........)))(((.......)))....)))))).)))))))........)))....------------------------------ ( -16.46)
>DroSec_CAF1 48820 87 - 1
UGAUUUCGCCCAUAAAAUUUACGCCUUUUGUUAUUAAACUUUAAGCUGCCCAAAAGCCAAUCAAAAGUGUGUAAAACUUCUAAGGCA---------------------------------
.......(((.......((((((((((((((((........)))(((.......)))....)))))).)))))))........))).--------------------------------- ( -16.46)
>DroSim_CAF1 57026 120 - 1
UGAUUUCGCCCAUAAAAUUUACGCCUUUUGUUAUUAAACUUUAAGCUGCCCAAAAGCCAAUCAAAAGUGUGUAAAACUUCUAAGGCACACACACACACUCGAGCACUCCGCACGCAAUUC
.......(((.......((((((((((((((((........)))(((.......)))....)))))).)))))))........))).............((.((.....)).))...... ( -18.26)
>DroEre_CAF1 50133 94 - 1
UGAUUUCGCCCAUAAAAUUUACGCCUUUUGUUAUUAAACUUUAAGCUGCCCAAAAGCCAAUCAAAAGUGUGUAAAACUUCUAAGGCACACACAC--------------------------
.......(((.......((((((((((((((((........)))(((.......)))....)))))).)))))))........)))........-------------------------- ( -16.46)
>DroYak_CAF1 52906 94 - 1
UGAUUUCGCCCAUAAAAUUUACGCCUUUUGUUAUUAAACUUUAAGCUGUCCAAAAGCCAAUCAAAAGUGUGUAAAACUUCUAAGGCCCACGCAC--------------------------
.......(((.......((((((((((((((((........)))(((.......)))....)))))).)))))))........)))........-------------------------- ( -15.56)
>consensus
UGAUUUCGCCCAUAAAAUUUACGCCUUUUGUUAUUAAACUUUAAGCUGCCCAAAAGCCAAUCAAAAGUGUGUAAAACUUCUAAGGCACAC_CAC__________________________
.......(((.......((((((((((((((((........)))(((.......)))....)))))).)))))))........))).................................. (-16.28 = -16.28 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:37 2006