Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,065,845 – 4,065,965 |
Length | 120 |
Max. P | 0.890922 |
Location | 4,065,845 – 4,065,965 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.88 |
Mean single sequence MFE | -33.40 |
Consensus MFE | -27.23 |
Energy contribution | -27.48 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.04 |
Mean z-score | -2.18 |
Structure conservation index | 0.82 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890922 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4065845 120 + 20766785 ACUUCCGAAAAAGGGAAACACUGUUUCGGCCAACUUCUACUUGACAAGACAACAGCCGAAAGCUGAGCAAGCAAAGCUGCGCAUUGUGUCACUUUUGUUUGCCGUUUCCAUCUUCAAUUC ......(((....((((((....(((((((.....(((........))).....)))))))...(.((((((((((.(((((...))).)).)))))))))))))))))...)))..... ( -33.50) >DroSec_CAF1 48427 118 + 1 ACUACCGAAAAAGGGCAAUACUGUU--GGCCAACAUCAACUUGACAAGACAACAGUCGAAAGCUGAGCAAGCAAAGCUGCGCAUUGUGUCAGUUUUGUUUGCCGUUUCCAUCUUCAAUUC ......(((...((.((((...)))--).))...............((((..(((.(....)))).((((((((((((((((...))).))))))))))))).)))).....)))..... ( -32.50) >DroSim_CAF1 56014 118 + 1 GCUACCGAAAAAGGGCAAUACUGUU--GGCUAACUUCAACUUGACAAGACAACAGCCGAAAGCUGAGCAAGCAAAGCUGCGCAUUGUGUCAGUUUUGUUUGCCGUUUCCAUCUUCAAUUC ((..((......))))......(((--((......)))))((((..(((...(((.(....)))).((((((((((((((((...))).)))))))))))))........)))))))... ( -31.60) >DroEre_CAF1 49742 118 + 1 ACUACGGAAAAAGGGCAACACUGUU--GACCCAAUUCAACUUGGCAAGACAACAGCCGAAAGCUGAGCAAGCAAAGCUGCGCAUUGUGUCAGUCUUGUUUGCUGUUUCCAUCUUCAAUUU .....(((((..(((((((...)))--).)))....................(((.(....))))(((((((((..((((((...))).)))..))))))))).)))))........... ( -36.00) >consensus ACUACCGAAAAAGGGCAACACUGUU__GGCCAACUUCAACUUGACAAGACAACAGCCGAAAGCUGAGCAAGCAAAGCUGCGCAUUGUGUCAGUUUUGUUUGCCGUUUCCAUCUUCAAUUC ......(((....((.(((.................................(((.(....)))).((((((((((((((((...))).))))))))))))).))).))...)))..... (-27.23 = -27.48 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:36 2006