Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,065,523 – 4,065,683 |
Length | 160 |
Max. P | 0.944027 |
Location | 4,065,523 – 4,065,643 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.69 |
Mean single sequence MFE | -36.50 |
Consensus MFE | -30.42 |
Energy contribution | -31.42 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.21 |
Mean z-score | -2.13 |
Structure conservation index | 0.83 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939654 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4065523 120 - 20766785 ACAUUGAGCUGUAGGACGAUGCGUUUUAAUGCGGGAAAAUUGCAUUUAUCCGCGUUGUUUUAGCCGCUUUGAUUAAUCUUUAGUUUGCACCACUGUCGGCUAAAGCGGCAAAAGCAUUCG .......(((.((((((((((((..(.(((((((.....))))))).)..))))))))))))(((((...((....))((((((..(((....)))..)))))))))))...)))..... ( -40.20) >DroSec_CAF1 48118 120 - 1 GCAUUGAGCUGUAAGACGAUGCGCCUUAAUGCGGGAAAAUUGCAUUUAUCCGCAUUGUUUUAGCCGCUUUGAUUAAUCUUUAGUUUGCAACGCUGUCGGCUAAAACGGCAAAAGCGUUCG .....((((..((((((((((((....(((((((.....)))))))....))))))))))))((((....((....))((((((..(((....)))..)))))).))))......)))). ( -37.50) >DroSim_CAF1 55711 120 - 1 GCAUUGAGCUGUAAGACGAUGCGCCUUAAUGCGGGAAAAUUGCAUUUAUCCGCAUUGUUUUAGCCGCUUUGAUUAAUCUUUAGUUUGCAGCGCUGUCGGCUAAAGUGGAAAAAGUGUUCG .....((((..((((((((((((....(((((((.....)))))))....))))))))))))...(((((..((...(((((((..(((....)))..)))))))..)).))))))))). ( -38.50) >DroEre_CAF1 49418 116 - 1 GAAUAGAGCUGUAAGUCAAUGCGCUUUAA-GCGAGAAACUUGCAUUUAUCCGCGUUGUUUAAGCCAUUUUAAUGUAUCUUUAGCUUGCAGCACUGUUGGCUC---CAGCAAAAGCGUUUG .(((((.((((((((((((((((....((-(((((...))))).))....))))))).......(((....)))........))))))))).))))).(((.---.......)))..... ( -29.80) >consensus GCAUUGAGCUGUAAGACGAUGCGCCUUAAUGCGGGAAAAUUGCAUUUAUCCGCAUUGUUUUAGCCGCUUUGAUUAAUCUUUAGUUUGCAGCACUGUCGGCUAAAGCGGCAAAAGCGUUCG .....((((..((((((((((((....(((((((.....)))))))....))))))))))))...(((((.......(((((((..(((....)))..))))))).....))))))))). (-30.42 = -31.42 + 1.00)
Location | 4,065,563 – 4,065,683 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.86 |
Mean single sequence MFE | -30.59 |
Consensus MFE | -17.82 |
Energy contribution | -19.46 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.25 |
Mean z-score | -1.90 |
Structure conservation index | 0.58 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944027 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4065563 120 - 20766785 UGUCCGUCCCAUGGUGCCCAAUGGCCACCAAAUCCAGAUCACAUUGAGCUGUAGGACGAUGCGUUUUAAUGCGGGAAAAUUGCAUUUAUCCGCGUUGUUUUAGCCGCUUUGAUUAAUCUU ...........(((((((....)).)))))......(((((....((((.(((((((((((((..(.(((((((.....))))))).)..))))))))))).)).)))))))))...... ( -36.30) >DroSec_CAF1 48158 116 - 1 UGU----CCCAUGGUGGCCAAUGGCCAUCAAAUCCAGAUCGCAUUGAGCUGUAAGACGAUGCGCCUUAAUGCGGGAAAAUUGCAUUUAUCCGCAUUGUUUUAGCCGCUUUGAUUAAUCUU ...----....((((((((...))))))))......(((((....((((.(((((((((((((....(((((((.....)))))))....))))))))))).)).)))))))))...... ( -39.30) >DroSim_CAF1 55751 116 - 1 UGU----CCCAUGGUGGCCAAUGGCCAUCAAAUCCAGAUCGCAUUGAGCUGUAAGACGAUGCGCCUUAAUGCGGGAAAAUUGCAUUUAUCCGCAUUGUUUUAGCCGCUUUGAUUAAUCUU ...----....((((((((...))))))))......(((((....((((.(((((((((((((....(((((((.....)))))))....))))))))))).)).)))))))))...... ( -39.30) >DroEre_CAF1 49455 96 - 1 -----------------------GGCACUAGAACCAAAUCGAAUAGAGCUGUAAGUCAAUGCGCUUUAA-GCGAGAAACUUGCAUUUAUCCGCGUUGUUUAAGCCAUUUUAAUGUAUCUU -----------------------(((............(((..((((((.(((......))))))))).-.))).((((.(((........)))..))))..)))............... ( -19.40) >DroYak_CAF1 52257 99 - 1 CGU----GCCA-------CAGUGGCCAUUAAGUCAUGAUCAAUUUGAACUGUAAGGCGGUGUGCUUUAAUACCAAAAACUUACAUUUAUUCCCAUAGUUUUAGCCAUUUU---------- ...----...(-------(((((((......)))....((.....)))))))..((((((((......))))).((((((...............)))))).))).....---------- ( -18.66) >consensus UGU____CCCAUGGUG_CCAAUGGCCAUCAAAUCCAGAUCGCAUUGAGCUGUAAGACGAUGCGCUUUAAUGCGGGAAAAUUGCAUUUAUCCGCAUUGUUUUAGCCGCUUUGAUUAAUCUU .....................((((.........(((.((.....)).)))((((((((((((....(((((((.....)))))))....)))))))))))))))).............. (-17.82 = -19.46 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:35 2006