Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,064,938 – 4,065,116 |
Length | 178 |
Max. P | 0.963420 |
Location | 4,064,938 – 4,065,036 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 85.24 |
Mean single sequence MFE | -22.17 |
Consensus MFE | -17.01 |
Energy contribution | -18.07 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.05 |
Mean z-score | -1.42 |
Structure conservation index | 0.77 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522986 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4064938 98 + 20766785 GCUAAUGGCGGCUGACUUUAUUUGGCUUUAAAGCAGAAAGCGCUCCACAUGAAAGGAAAUAG-----AAAGAAAAGAAUGGACGCGGAAAGCAAACAGCCACC ......((.(((((..(((((((..((((...((.....))..(((........))).....-----))))....))))))).((.....))...))))).)) ( -21.40) >DroSec_CAF1 47540 98 + 1 GCUAAUGGCGGCUGACUUUAUUUGGCUUUAAAGCAGAACGCGCUCCAAAUACUAAGAAAUAG-----AAUGAAAAGAAUGGACGCGGAAAGCAAACAGCCAGC ((.....))(((((..........(((....)))....((((.((((....(((.....)))-----..(....)...)))))))).........)))))... ( -22.90) >DroSim_CAF1 54105 98 + 1 GCUAAUGGCGGCUGACUUUAUUUGGCUUUAAAGCAGAACGCGCACCAAAUAAAAGGAAAUAG-----AAUGAAAAGAAUGGACGCGGAAAGCAAACAGCCAGC ((.....))(((((..(((((((((.......((.....))...))))))))).........-----................((.....))...)))))... ( -20.90) >DroEre_CAF1 48832 99 + 1 GCUAAUGGCGGCUGACUUUAUUUGGCUUUAAAGCCGCAACCGCUCAAAAUAAAAAGAACAAGAGAAA----AAGGAAAUAGACGCGGAAAGCACACAGCCACC ......((.(((((.........((((....))))((..((((((......................----.........)).))))...))...))))).)) ( -23.48) >consensus GCUAAUGGCGGCUGACUUUAUUUGGCUUUAAAGCAGAAAGCGCUCCAAAUAAAAAGAAAUAG_____AAUGAAAAGAAUGGACGCGGAAAGCAAACAGCCACC ((.....))(((((..(((((((((......(((.......))))))))))))..............................((.....))...)))))... (-17.01 = -18.07 + 1.06)
Location | 4,064,938 – 4,065,036 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 85.24 |
Mean single sequence MFE | -25.15 |
Consensus MFE | -18.50 |
Energy contribution | -19.51 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.22 |
Structure conservation index | 0.74 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913812 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4064938 98 - 20766785 GGUGGCUGUUUGCUUUCCGCGUCCAUUCUUUUCUUU-----CUAUUUCCUUUCAUGUGGAGCGCUUUCUGCUUUAAAGCCAAAUAAAGUCAGCCGCCAUUAGC ((((((((...((.((((((((..............-----............)))))))).)).....((((((........))))))))))))))...... ( -27.17) >DroSec_CAF1 47540 98 - 1 GCUGGCUGUUUGCUUUCCGCGUCCAUUCUUUUCAUU-----CUAUUUCUUAGUAUUUGGAGCGCGUUCUGCUUUAAAGCCAAAUAAAGUCAGCCGCCAUUAGC ((((((((((((.....((((((((...........-----(((.....)))....)))).))))....(((....))))))))..))))))).......... ( -22.06) >DroSim_CAF1 54105 98 - 1 GCUGGCUGUUUGCUUUCCGCGUCCAUUCUUUUCAUU-----CUAUUUCCUUUUAUUUGGUGCGCGUUCUGCUUUAAAGCCAAAUAAAGUCAGCCGCCAUUAGC ((((((((..(((.....)))..))...........-----.........((((((((((..((.....))......)))))))))))))))).......... ( -21.70) >DroEre_CAF1 48832 99 - 1 GGUGGCUGUGUGCUUUCCGCGUCUAUUUCCUU----UUUCUCUUGUUCUUUUUAUUUUGAGCGGUUGCGGCUUUAAAGCCAAAUAAAGUCAGCCGCCAUUAGC ((((((((...((...((((.((.........----......................))))))..))((((....)))).........))))))))...... ( -29.68) >consensus GCUGGCUGUUUGCUUUCCGCGUCCAUUCUUUUCAUU_____CUAUUUCCUUUUAUUUGGAGCGCGUUCUGCUUUAAAGCCAAAUAAAGUCAGCCGCCAUUAGC ((((((((...(((((..(((((((...............................))).)))).....(((....))).....)))))))))))))...... (-18.50 = -19.51 + 1.00)
Location | 4,065,000 – 4,065,116 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.97 |
Mean single sequence MFE | -38.54 |
Consensus MFE | -34.60 |
Energy contribution | -35.04 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -1.71 |
Structure conservation index | 0.90 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963420 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4065000 116 - 20766785 UGGCCGUAAUGAAGACUAUCAGAUGGUCAUAAGGAUCGGGGGAGGCCAUUGUGGCUUUUGUUCAGCCUACAAUGGGAGUUGGUGGCUGUUUGCUUUCCGCGUCCAUUCUUUUCUUU---- (((((((..(((......))).)))))))...(((.((.(((((((((((((((((.......)))).))))))..(((.....)))....))))))).)))))............---- ( -38.50) >DroSec_CAF1 47602 116 - 1 UGGCCGUAAUGAAGACUAUCAGAUGGUCAUAAGGAUCGGGGGAGGCCAUUGUGGCUUUUGUUCAGCCUUCAAUGGGUGUUGCUGGCUGUUUGCUUUCCGCGUCCAUUCUUUUCAUU---- (((((((..(((......))).)))))))...(((.((.(((((((....(..(((...((...((((.....))))...)).)))..)..))))))).)))))............---- ( -38.40) >DroSim_CAF1 54167 116 - 1 UGGCCGUAAUGAAGACUAUCAGAUGGUCAUAAGGAUCGGGGGAGGCCAUUGUGGCUUUUGUUCAGCCUUCAAUGGGUGUUGCUGGCUGUUUGCUUUCCGCGUCCAUUCUUUUCAUU---- (((((((..(((......))).)))))))...(((.((.(((((((....(..(((...((...((((.....))))...)).)))..)..))))))).)))))............---- ( -38.40) >DroEre_CAF1 48899 112 - 1 UGGCCGUAAUGAAGACUAUCAGAUGGUCAUAAGGAUCGGGGGAGGCCAUUGUGGCUGUUGUUCUGCCUUCAAUGAGAGUUGGUGGCUGUGUGCUUUCCGCGUCUAUUUCCUU-------- (((((((..(((......))).))))))).(((((.((.((((((((((.(((((.........))).(((((....)))))..)).))).))))))).))......)))))-------- ( -37.00) >DroYak_CAF1 51722 117 - 1 UGGCCGUAAUGAAGACUAUCAGAUGGCCAUAAGGAUCGGGGGAGGCCAUUGUGGCCUUUGUUGUGCCUUCAAUGGGAGUUG---GCUGCGUGCUUUCCGCGUCUAUUCUCUUCUUUUUAU (((((((..(((......))).))))))).((((..(((.(((((((.....))))))).)))..))))....((((((.(---((.(((.......)))))).)))))).......... ( -40.40) >consensus UGGCCGUAAUGAAGACUAUCAGAUGGUCAUAAGGAUCGGGGGAGGCCAUUGUGGCUUUUGUUCAGCCUUCAAUGGGAGUUGCUGGCUGUUUGCUUUCCGCGUCCAUUCUUUUCAUU____ (((((((..(((......))).)))))))...(((((((((((((((.....)))))))((.(((((..((((....))))..)))))...))..)))).))))................ (-34.60 = -35.04 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:29 2006