Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,063,394 – 4,063,513 |
Length | 119 |
Max. P | 0.998997 |
Location | 4,063,394 – 4,063,513 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.15 |
Mean single sequence MFE | -18.43 |
Consensus MFE | -17.56 |
Energy contribution | -17.08 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.13 |
Mean z-score | -2.14 |
Structure conservation index | 0.95 |
SVM decision value | 3.32 |
SVM RNA-class probability | 0.998997 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4063394 119 + 20766785 GGCAAAGUUAUUUACCGUAAAAAUAUAACUUUUUCUUGCAGCUAUUUUUCUUUUCCUUUGUCCUUUUUCUCAAGUGGUUGUUUGUUUAUGGAAUUUUCAUUUGUCUCUUU-UUUCACUUC ((((((........(((((((...((((((....((((.((........(.........)........)))))).))))))...)))))))........)))))).....-......... ( -18.18) >DroSec_CAF1 46177 119 + 1 GGCAAAGUUAUUUACCGUAAAAAUAUAACUUUUUCUUGCAGCUAUUUUCCUUUUCCUUUGUCCUUUUUCUCAAGUGGUUGUUUGUUUAUGGAAUUUUCAUUUGUCUCUUU-UUUCACUUC ((((((........(((((((...((((((....((((.((...........................)))))).))))))...)))))))........)))))).....-......... ( -17.82) >DroSim_CAF1 52751 120 + 1 GGCAAAGUUAUUUACCGUAAAAAUAUAACUUUUUCUUGCAGCUAUUUUCCUUUUCCUUUGUCCUUUUUCUCAAGUGGUUGUUUGUUUAUGGAAUUUUCAUUUGUCUCUUUUUUUCACUUC ((((((........(((((((...((((((....((((.((...........................)))))).))))))...)))))))........))))))............... ( -17.82) >DroEre_CAF1 47337 119 + 1 GGCGAAGUUAUUUACCGUAAAAAUAUAACUUUUUCUUGCAGCUAUUUUUCUUUUCCUUUGUCCUUUUUCUGAAGUGGCUGUUUGUUUAUGGAAUUUUCAUUUGUCUCCUU-UUUCGCUUC ((((((........(((((((................(((((((((((......................)))))))))))...)))))))........)))))).....-......... ( -20.45) >DroYak_CAF1 50126 119 + 1 GGCAAAGUUAUUUACCGUAAAAAUAUAACUUUUUCUUGCAGCUAUUUUUCUUUUCCUUUGUCCUUUUUCUCAAGUGGUUGCUUGUUUAUGGAAUUUUCAUUUGUCUCUUU-UUUCACUUC ((((((........(((((((................((((((((((........................))))))))))...)))))))........)))))).....-......... ( -17.86) >consensus GGCAAAGUUAUUUACCGUAAAAAUAUAACUUUUUCUUGCAGCUAUUUUUCUUUUCCUUUGUCCUUUUUCUCAAGUGGUUGUUUGUUUAUGGAAUUUUCAUUUGUCUCUUU_UUUCACUUC ((((((........(((((((................((((((((((........................))))))))))...)))))))........))))))............... (-17.56 = -17.08 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:26 2006