Locus 921

Sequence ID 2R_DroMel_CAF1
Location 4,063,163 – 4,063,274
Length 111
Max. P 0.902378
window1626

overview

Window 6

Location 4,063,163 – 4,063,274
Length 111
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 83.33
Mean single sequence MFE -27.57
Consensus MFE -18.09
Energy contribution -18.90
Covariance contribution 0.81
Combinations/Pair 1.13
Mean z-score -2.31
Structure conservation index 0.66
SVM decision value 1.02
SVM RNA-class probability 0.902378
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4063163 111 + 20766785
-----UUAGGGAGAAAAGCACCUUAAGUUAAUUUACAUCAAUUUGCAUAGCAUUUGCUCUAGAAAAUAUUGUGCGAACAACUGCUUUUUACUCUUUUCAUCCGGUUC-CAUUCGGAA
-----..((((.((((((((......((......)).....(((((((((.((((........)))).)))))))))....)))))))).)))).....(((((...-...))))). ( -26.30)
>DroSec_CAF1 45962 111 + 1
-----UUAGGGAGAAAAGCUCCGUAAGUUAAUUUACAUCAAUUUGCAUAGCAUUUUCACUAGAAAAUAUUGUGCGAGCAACUGCUUUUUACUCUUUACAUCCGGUUU-CAUUCGGAA
-----.(((((((((((((...(((((....))))).....(((((((((.((((((....)))))).))))))))).....))))))..)))))))..(((((...-...))))). ( -30.80)
>DroSim_CAF1 52520 111 + 1
-----UUAGGGAGAAAAGCACAUUAAGUUAAUUUACAUCAAUUUGCAUAGCAUUUACUCUAGAAAAUAUUGUGCGAGCAACUGCUUUUUACUCUUUACAUCCGGUUU-CAUUCGGAA
-----.((((((((((((((......((......)).....(((((((((.((((.(....).)))).)))))))))....)))))))..)))))))..(((((...-...))))). ( -25.40)
>DroEre_CAF1 47108 117 + 1
UAUAAUUAGGCAGCAAACCAGCUUAAGUUAUUGCACGUCCAUUUCCAUAGCAUUUGCCGUAGAAAAUAUUGUGCGAGCAACUGUUCCUAACUCUUUUUAUCGGGUUCGGAAUUCGGA
......(((((.........)))))((((.(((((((....((((.(..((....))..).))))....)))))))..))))(((((.(((((........))))).)))))..... ( -27.80)
>consensus
_____UUAGGGAGAAAAGCACCUUAAGUUAAUUUACAUCAAUUUGCAUAGCAUUUGCUCUAGAAAAUAUUGUGCGAGCAACUGCUUUUUACUCUUUACAUCCGGUUC_CAUUCGGAA
.......((((.(((((((.......((......)).....(((((((((.((((........)))).))))))))).....))))))).)))).....(((((.......))))). (-18.09 = -18.90 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:25 2006