Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,060,898 – 4,061,015 |
Length | 117 |
Max. P | 0.902220 |
Location | 4,060,898 – 4,061,015 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.69 |
Mean single sequence MFE | -22.17 |
Consensus MFE | -20.66 |
Energy contribution | -20.62 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.42 |
Structure conservation index | 0.93 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.902220 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4060898 117 + 20766785 CACAAGCAUUUCGUUCCC---GACUAUGUGGGCGAUUUUCCUUUGCUUCGCCCAUAAGUUUAUUUAUGUUUAUUUUGUGGCUAAUGUAAUUUUUGGCAAAUAAUCAUCUAAUUUGUUUUC ((((((.....(((....---((((.(((((((((............))))))))))))).....))).....))))))(((((........)))))....................... ( -26.90) >DroSec_CAF1 43618 113 + 1 CACAAGCAUUUCGUUCCCUAUGACUAUGUGGGCGAUUUUCCUCUGCUUCGCCCAUAAGUU-------GUUUAUUUUGUGGCUAAUGUAAUUUUUGGCAAAUAAUCAUCUAAUUUGUUUUC (((((((.....)).....(..(((.(((((((((............)))))))))))).-------.).....)))))(((((........)))))....................... ( -24.80) >DroSim_CAF1 50252 113 + 1 CACAAGCAUUUCGUUCCCUCUGACUAUGUGGGCGAUUUUCCUCUGCUUCGCCCAUAAGUU-------GUUUAUUUUGUGGCUAAUGUAAUUUUUGGCAAAUAAUCAUCUAAUUUGUUUUC (((((((.....)).......((((.(((((((((............)))))))))))))-------.......)))))(((((........)))))....................... ( -24.20) >DroEre_CAF1 44785 110 + 1 CACAAGCAUUUCAUUCCG---GACUAUGUGGGCAAUUUUCCUCAGCUUUAUCUAUAAGUU-------GUUUAUUUUGUGGCUAAUGUAAUUUUUGGCAAAUAAUCAUCUAAUUUGUUUUC (((((((....(((....---....)))...)).........((((((.......)))))-------)......)))))(((((........)))))....................... ( -15.70) >DroYak_CAF1 47490 110 + 1 CACAAGGAUUUCAUUUCG---GACUAUGUGGGCCAUUUUCCUCGGCUUUAUCCAUAAGUU-------GUUUAUUUUGUGGCUAAUGUAAUUUUUGGCAAAUAAUCAUCUAAUUUGUUUUC ..((((((((.((((...---..(.....)((((((......((((((.......)))))-------)........)))))))))).))))))))((((((.........)))))).... ( -19.24) >consensus CACAAGCAUUUCGUUCCC___GACUAUGUGGGCGAUUUUCCUCUGCUUCGCCCAUAAGUU_______GUUUAUUUUGUGGCUAAUGUAAUUUUUGGCAAAUAAUCAUCUAAUUUGUUUUC ((((((.((............((((.(((((((((............)))))))))))))...........))))))))(((((........)))))....................... (-20.66 = -20.62 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:20 2006