Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,059,662 – 4,059,782 |
Length | 120 |
Max. P | 0.728584 |
Location | 4,059,662 – 4,059,782 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.00 |
Mean single sequence MFE | -29.20 |
Consensus MFE | -22.26 |
Energy contribution | -22.38 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.13 |
Mean z-score | -2.01 |
Structure conservation index | 0.76 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728584 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4059662 120 - 20766785 UUGACUGCCGUUGAGAGGAUUACAGUCGCAUAAAACGCACAAAUGGCAUUUGCAAUGGCAACAAAAUGUCAGUCAAACGUCAAGAGAGCUGUGAAAAUAGCAGAACAAAUAAAUGAGCUU ((((((((((((.....(((....)))((.......))...)))))))((((...(((((......)))))..)))).)))))....(((((....)))))................... ( -27.40) >DroSec_CAF1 42450 120 - 1 UUGACUGCCGUUGAGAGGAUUACAGUCGCAUAAAACGCACAAAUGGCAUUUGCAAUGGCAACAAAAUGUCAGUUAAACGUCAAGAGAGCUGUGAAAAUAGCAGAGCAAAUAAAUGAGCUU ((((((((((((.....(((....)))((.......))...))))))).......(((((......))))).......)))))....(((((....))))).((((..........)))) ( -27.30) >DroSim_CAF1 48644 120 - 1 UUGACUGCCGUUGAGAGGAUUACAGUCGCAUAAAACGCACAAAUGGCAUUUGCAAUGGCAACAAAAUGUCAGUCAAACGUCAAGAGAGCUGUGAAAAUAGCAGAGCAAAUAAAUGAGCUU ((((((((((((.....(((....)))((.......))...)))))))((((...(((((......)))))..)))).)))))....(((((....))))).((((..........)))) ( -29.00) >DroEre_CAF1 43702 120 - 1 UCGACUGCCGUUGAGAGGAUUACAGUGGCAUAAAACGCACAAAUGCCAUUUGCAAUCGCAACGAAAUGUCAGUCAAACGUCAAGAGAGCUGUGAAAAUAGUAGAACAAAUAAAUGAGCUU ..(((((((((((....((((.(((((((((...........)))))).))).)))).)))))....).))))).............(((((....)))))................... ( -26.50) >DroYak_CAF1 46420 120 - 1 UCGACCGCCGUUGAGAGGAUUACAGUCGCAUAAAAUGCACAAAUGGCGUUUGCAAUGGCAACAAAAUGUCAGUCAAACGUCGAAAACGCUGUGAAAAUAACACAGCAAAUAAAUGAGCUU (((((.((((((.....(((....)))((((...))))...))))))(((((...(((((......)))))..))))))))))....((((((.......)))))).............. ( -35.80) >consensus UUGACUGCCGUUGAGAGGAUUACAGUCGCAUAAAACGCACAAAUGGCAUUUGCAAUGGCAACAAAAUGUCAGUCAAACGUCAAGAGAGCUGUGAAAAUAGCAGAGCAAAUAAAUGAGCUU ((((((((((((.....(((....)))((.......))...)))))))((((...(((((......)))))..)))).)))))....(((((....)))))................... (-22.26 = -22.38 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:19 2006