Locus 916

Sequence ID 2R_DroMel_CAF1
Location 4,058,188 – 4,058,308
Length 120
Max. P 0.971494
window1619

overview

Window 9

Location 4,058,188 – 4,058,308
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.50
Mean single sequence MFE -35.92
Consensus MFE -33.58
Energy contribution -33.98
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.93
SVM decision value 1.68
SVM RNA-class probability 0.971494
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4058188 120 + 20766785
CCACAUCGGCUUGGAUCCCGGAAACUUUCUGCCGACGGCAGGCUGCUACAAAAAUAUGUGUCAACAUAUUGUCGAAAGCUGAUGUUUUUUCCUGAUGUCGGGACAAAAUGUUUACGGCAA
(((((((((((((((....(....)..)))..(((((((.....))).....(((((((....))))))))))).))))))))))(((.(((((....))))).)))........))... ( -35.30)
>DroSec_CAF1 40906 120 + 1
CCACAUCGGCUUGGAUCCCGGAAACUUUCUGCCGACGGCAGGCUGCUACAAAAAUAUGUGUCAACAUAUUGUCGAAAGCUGAUGUUUUUUCCUGAUGUCGGGACCAAAUGUUUACGGCAA
(((((((((((((((....(....)..)))..(((((((.....))).....(((((((....))))))))))).))))))))))....(((((....)))))............))... ( -34.90)
>DroSim_CAF1 47093 120 + 1
CCACAUCGGCUUGGAUCCCGGAAACUUUCUGCCGACGGCAGGCUGCUACAAAAAUAUGUGUCAACAUAUUGUCGAAAGCUGAUGUUUUUUCCUGAUGUCGGGACAAAAUGUUUACGGCAA
(((((((((((((((....(....)..)))..(((((((.....))).....(((((((....))))))))))).))))))))))(((.(((((....))))).)))........))... ( -35.30)
>DroEre_CAF1 41739 120 + 1
CCACAUCGGCAUGCAUCCCGGAAACUUUCUGCCGACGGCAGGCUGCUACAAAAAUAUGUGUCAACAUAUUGUCGCAAGCUGAUGUUUUUUCCUGAUGUCGGGACAAAAUGUUUACGGCAA
((((((((((..((.....(....)...(((((...)))))))(((.(((...((((((....))))))))).))).))))))))(((.(((((....))))).)))........))... ( -37.40)
>DroYak_CAF1 44440 120 + 1
CCACAUCGGCUUGCAUCCCGGAAACUUUCUGCCGACGGCAGGCUGCUACAAAAAUAUGUGUCAACAUAUUGUCGAAAGCUGAUGUUUUUUCCUGAUGUCGGGACAAAAUGUUUACGGCAA
(((((((((((((((....(....)....)))(((((((.....))).....(((((((....))))))))))).))))))))))(((.(((((....))))).)))........))... ( -36.70)
>consensus
CCACAUCGGCUUGGAUCCCGGAAACUUUCUGCCGACGGCAGGCUGCUACAAAAAUAUGUGUCAACAUAUUGUCGAAAGCUGAUGUUUUUUCCUGAUGUCGGGACAAAAUGUUUACGGCAA
((((((((((((.......(....).......(((((((.....))).....(((((((....))))))))))).))))))))))(((.(((((....))))).)))........))... (-33.58 = -33.98 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:18 2006