Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,057,140 – 4,057,444 |
Length | 304 |
Max. P | 0.955632 |
Location | 4,057,140 – 4,057,249 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.58 |
Mean single sequence MFE | -23.72 |
Consensus MFE | -21.14 |
Energy contribution | -21.10 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.20 |
Structure conservation index | 0.89 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617035 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4057140 109 + 20766785 UUCAACAAAUUGAAACCACAAAAACUUGCCGAGCCGUUUUAAAACAGUUUAAAAACA-----------GUUGCUGCACAUUUAAAGUUCAAUUUACAAGGACUUUGAGUGGUUAGCUGCA (((((....)))))................((((.(((....))).)))).......-----------((.((((..((((((((((((.........))))))))))))..)))).)). ( -22.80) >DroSec_CAF1 39822 120 + 1 UUGAACAAAUUGAAACCACAAAAACUUGCCGAGCCGUUUUAAAACAGUUUAAAAACAGUCGAACUUCAGUUGCUGCACAUUUAAAGUUCAAUUUACAAGGACUUUGAGUGGCUAGCUGCA .......(((((((....(((....))).(((....(((((((....)))))))....)))...)))))))(((((.((((((((((((.........)))))))))))))).))).... ( -25.80) >DroSim_CAF1 45991 120 + 1 UUGAACAAAUUGAAACCACAAAAACUUGCCGAGCCGUUUUAAAACAGUUUAAAAACAGUCGAACUUCAGUUGCUGCACAUUUAAAGUUCAAUUUACAAGGACUUUGAGUGGCUAGCUGCA .......(((((((....(((....))).(((....(((((((....)))))))....)))...)))))))(((((.((((((((((((.........)))))))))))))).))).... ( -25.80) >DroEre_CAF1 40595 119 + 1 UUUAACAAAUUGAAACCACA-AAACUUGCCGAGCCGUUUUAAAACAGUUUAAAAACAGUCGAACUUCAGUUGCUGCACACCUAAAGUUCAAUUUACAAAGGCUUUGAGUGGCUAGCUGCA ....................-...((.((((((((.(((((((....)))))))......((((((.((.((.....)).)).))))))..........))))).....))).))..... ( -19.90) >DroYak_CAF1 43310 120 + 1 UUCCACAAAUUGAAACCACAGAAACUUGCCGAGCCGUUUUAAAACAGUUUAAAAACAGUCGAACUUCAGUUGCUGCACACUUAAAGUUCAAUUUACAAAGGCUUUGAGUGGCUAGCUGCA .......(((((((....(((....))).(((....(((((((....)))))))....)))...)))))))(((((.(((((((((((...........))))))))))))).))).... ( -24.30) >consensus UUCAACAAAUUGAAACCACAAAAACUUGCCGAGCCGUUUUAAAACAGUUUAAAAACAGUCGAACUUCAGUUGCUGCACAUUUAAAGUUCAAUUUACAAGGACUUUGAGUGGCUAGCUGCA ..............................((((.(((....))).))))..................((.(((((.((((((((((((.........)))))))))))))).))).)). (-21.14 = -21.10 + -0.04)
Location | 4,057,180 – 4,057,284 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.92 |
Mean single sequence MFE | -23.16 |
Consensus MFE | -20.36 |
Energy contribution | -20.32 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.11 |
Mean z-score | -1.21 |
Structure conservation index | 0.88 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4057180 104 + 20766785 AAAACAGUUUAAAAACA-----------GUUGCUGCACAUUUAAAGUUCAAUUUACAAGGACUUUGAGUGGUUAGCUGCAUGUGCAUACCUGGCCAAAAAUUCAAAAGAAACUUU----- ....(((.......(((-----------((.((((..((((((((((((.........))))))))))))..)))).)).)))......))).......................----- ( -23.22) >DroSec_CAF1 39862 120 + 1 AAAACAGUUUAAAAACAGUCGAACUUCAGUUGCUGCACAUUUAAAGUUCAAUUUACAAGGACUUUGAGUGGCUAGCUGCAUGUGCAUACCUGGCCAAAAAUUCAAAAGAAACUUUCAGUU .....(((((.....((((..(((....)))))))...(((((((((((.........)))))))))))((((((.(((....)))...)))))).............)))))....... ( -25.30) >DroSim_CAF1 46031 120 + 1 AAAACAGUUUAAAAACAGUCGAACUUCAGUUGCUGCACAUUUAAAGUUCAAUUUACAAGGACUUUGAGUGGCUAGCUGCAUGUGCAUACCUGGCCAAAAAUUCAAAAGAAACUUUCAGUU .....(((((.....((((..(((....)))))))...(((((((((((.........)))))))))))((((((.(((....)))...)))))).............)))))....... ( -25.30) >DroEre_CAF1 40634 120 + 1 AAAACAGUUUAAAAACAGUCGAACUUCAGUUGCUGCACACCUAAAGUUCAAUUUACAAAGGCUUUGAGUGGCUAGCUGCAUGUACAUACCUGGCCAACAAUUCAAAAGAAACUUUCCGCU .....(((((..........((((((.((.((.....)).)).)))))).............(((((((((((((.((........)).)))))))....))))))..)))))....... ( -20.50) >DroYak_CAF1 43350 120 + 1 AAAACAGUUUAAAAACAGUCGAACUUCAGUUGCUGCACACUUAAAGUUCAAUUUACAAAGGCUUUGAGUGGCUAGCUGCAUGUACAUACCUGGCCAAAAAUUCAAAAGAAACUUUAAGUU .....(((((..................((.(((((.(((((((((((...........))))))))))))).))).)).((..((....))..))............)))))....... ( -21.50) >consensus AAAACAGUUUAAAAACAGUCGAACUUCAGUUGCUGCACAUUUAAAGUUCAAUUUACAAGGACUUUGAGUGGCUAGCUGCAUGUGCAUACCUGGCCAAAAAUUCAAAAGAAACUUUCAGUU .....(((((..................((.(((((.((((((((((((.........)))))))))))))).))).)).((..((....))..))............)))))....... (-20.36 = -20.32 + -0.04)
Location | 4,057,284 – 4,057,404 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -24.03 |
Consensus MFE | -22.45 |
Energy contribution | -22.23 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.72 |
Structure conservation index | 0.93 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.955632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4057284 120 - 20766785 AAAGAUAAACAUUAGCAGACUUUAGUUUCGAAAGAAAUGUGAGACAAUUAAAAAAAAGCAAUGGAAAGGAUACAAUGGUGAGGCGAUCGAAGAACUUGCAUUAUCCUAUAAAAGUUUGCG ..............(((((((((.(((((....)))))............................((((((.....(..((............))..)..))))))...))))))))). ( -26.10) >DroSec_CAF1 39982 120 - 1 AAAGAUAAACAUUAGCAGACUUUAGUUUCGAAAGAAAUGUGAGACAAUUAAAAAAAAGCAAUGGAAAAGAUACAAUGGUGAAGCGAUCAAAGAACUUGCAUUAUCCCAUAAAAGUUUGCG ..............(((((((((.(((((....)))))......................((((............(((((.((((.........)))).))))))))).))))))))). ( -23.00) >DroSim_CAF1 46151 120 - 1 AAAGAUAAACAUUAGCAGACUUUAGUUUCGAAAGAAAUGUGAGACAAUUAAAAAAAAGCAAUGGAAAAGAUACAAUGGUGAAGCGAUCAAAGAACUUGCAUUAUCCCAUAAAAGUUUGCG ..............(((((((((.(((((....)))))......................((((............(((((.((((.........)))).))))))))).))))))))). ( -23.00) >consensus AAAGAUAAACAUUAGCAGACUUUAGUUUCGAAAGAAAUGUGAGACAAUUAAAAAAAAGCAAUGGAAAAGAUACAAUGGUGAAGCGAUCAAAGAACUUGCAUUAUCCCAUAAAAGUUUGCG ..............(((((((((.(((((....)))))......................((((............(((((.((((.........)))).))))))))).))))))))). (-22.45 = -22.23 + -0.22)
Location | 4,057,324 – 4,057,444 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -21.07 |
Consensus MFE | -21.74 |
Energy contribution | -21.63 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -1.34 |
Structure conservation index | 1.03 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636841 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4057324 120 - 20766785 GUUGAAGCUGAAUCUAUUCUAUAUCUAAACUCUUUUACACAAAGAUAAACAUUAGCAGACUUUAGUUUCGAAAGAAAUGUGAGACAAUUAAAAAAAAGCAAUGGAAAGGAUACAAUGGUG ........((.((((.((((((........(((((.....)))))..............(((..(((((....)))))..))).................)))))).)))).))...... ( -17.20) >DroSec_CAF1 40022 120 - 1 GUUGGAGCUGAAUCUUUUCCAUAUUAAAACUCUUUUACACAAAGAUAAACAUUAGCAGACUUUAGUUUCGAAAGAAAUGUGAGACAAUUAAAAAAAAGCAAUGGAAAAGAUACAAUGGUG ........((.(((((((((((........(((((.....)))))..............(((..(((((....)))))..))).................))))))))))).))...... ( -23.00) >DroSim_CAF1 46191 120 - 1 GUUGAAGCUGAAUCUUUUCCAUAUUAAAACUCUUUUACACAAAGAUAAACAUUAGCAGACUUUAGUUUCGAAAGAAAUGUGAGACAAUUAAAAAAAAGCAAUGGAAAAGAUACAAUGGUG ........((.(((((((((((........(((((.....)))))..............(((..(((((....)))))..))).................))))))))))).))...... ( -23.00) >consensus GUUGAAGCUGAAUCUUUUCCAUAUUAAAACUCUUUUACACAAAGAUAAACAUUAGCAGACUUUAGUUUCGAAAGAAAUGUGAGACAAUUAAAAAAAAGCAAUGGAAAAGAUACAAUGGUG ........((.(((((((((((........(((((.....)))))..............(((..(((((....)))))..))).................))))))))))).))...... (-21.74 = -21.63 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:13 2006