| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,056,055 – 4,056,173 |
| Length | 118 |
| Max. P | 0.500000 |
| Location | 4,056,055 – 4,056,173 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.08 |
| Mean single sequence MFE | -31.20 |
| Consensus MFE | -21.14 |
| Energy contribution | -22.46 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4056055 118 + 20766785 AAUAGGCUCUAUGAAAUGUCGGCCAUCGCGAAACGUCAAGGACGUUUCAAAAGUUCACCCCUUGAACCAGAAACCUGGUCAGUUUCAGGGCAGUGCUUUGUUC-CUAGCAUUUUUA-AAA .....(((((..(((((...(((((....((((((((...))))))))....(((((.....)))))........))))).))))))))))((((((......-..))))))....-... ( -33.40) >DroSec_CAF1 38751 117 + 1 AAUAGGCUCUAUGAAAUGUCGGCCAUUGCGAAACGUCAAGGACGUUUCAAAAGUUCACCCCUUGAACCAAAAACCUGAUCAGUUCCAGAGCAGUGCUUUGUUC-CCAGCAUU-UUA-AAA .....(((((..(((.((((((.......((((((((...))))))))....(((((.....))))).......)))).)).))).)))))((((((......-..))))))-...-... ( -29.70) >DroSim_CAF1 44894 118 + 1 AAUAGGCUCUAUGAAAUAUCGGCCAUCGCGGAACUUCAAGGACGUUUCAAAAGUUCACCCCUUGAACCAAAAACCUAGUCAGUUCCAGAGCAGUGCUUUGUUCCCCAGCAUU-UUA-AAA ....((((............))))...((((((((.....(((.........(((((.....)))))..........))))))))).((((((....))))))....))...-...-... ( -24.11) >DroEre_CAF1 39522 118 + 1 AAUAGGCUCCAUGGGAUUUCUGCCACCCCGGAACGUCAAGGACGUUUCAAAAGUUCACCCCUUGAUCCAGAAUGCUGGUCAGCUCUAAAGCAACGCUUUGUUC-CGAGCAUU-UUAAAAA .....((((...(((((....((......((((((((...))))))))....(((.......(((.((((....)))))))(((....))))))))...))))-)))))...-....... ( -29.90) >DroYak_CAF1 42210 118 + 1 AAUAGGCUGCAUGGGAUUGCGGCCACCUUGGAACGUCAAGGACGGUUCGAAAGUUCACCCCUUGAUCCAAAAACCUGGUCAGUUCUAAAGCAAUGCUUUGUUG-CGAGCAUU-UUAAAAA ....(((((((......)))))))...((((((((((((((..(((.(....)...))))))))))(((......)))...)))))))...(((((((.....-.)))))))-....... ( -38.90) >consensus AAUAGGCUCUAUGAAAUGUCGGCCAUCGCGGAACGUCAAGGACGUUUCAAAAGUUCACCCCUUGAACCAAAAACCUGGUCAGUUCCAGAGCAGUGCUUUGUUC_CCAGCAUU_UUA_AAA .....((((..((((((...(((((....((((((((...))))))))....(((((.....)))))........))))).))))))))))((((((.........))))))........ (-21.14 = -22.46 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:10 2006