Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,050,648 – 4,050,766 |
Length | 118 |
Max. P | 0.774740 |
Location | 4,050,648 – 4,050,766 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.15 |
Mean single sequence MFE | -35.15 |
Consensus MFE | -26.86 |
Energy contribution | -27.42 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.09 |
Mean z-score | -1.83 |
Structure conservation index | 0.76 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774740 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4050648 118 + 20766785 UCGUUUGCGGGACAUGGCGCUCUUGUCUGCACUUGUACGACAAGAGCUUGGACCAUGAUUAAGAAAUGUAAACAAUCCACAUCAAAAAAAAGUGGCUGAAUGUCC--CUAAGUCGGCAUC (((((((.(((((((...((((((((((((....))).)))))))))(..(.((((.........((((.........)))).........)))))..)))))))--))))).))).... ( -36.97) >DroSec_CAF1 33167 120 + 1 UCGUUUGCGGGACAUGGCGCUCUUGUCUGCAGUUGUACGACAAGAGCUUGGACCAUGAUUAAGAAAUGUAAACAAUCUACAUAAAAAAAAAGUGGCUGAAUGUCCGUCUAAGUCGGCAUC .((....))((((((...((((((((((((....))).)))))))))(..(.((((.........(((((.......))))).........)))))..)))))))(((......)))... ( -36.37) >DroSim_CAF1 38067 119 + 1 UCGUUUGCGGGACAUGGCGCUCUUGUCUGCAGUUGUACGACAAGAGCUUGGACCAUGAUUAAGAAAUGUAAACAAUCUACAUCAAA-AAAAGUGGCUGAAUGUCCGUCUAAGUCGGCAUC .((....))((((((...((((((((((((....))).)))))))))(..(.((((.........(((((.......)))))....-....)))))..)))))))(((......)))... ( -35.93) >DroEre_CAF1 32608 118 + 1 UCGUUUGCGGGACAUGGCGCUCUUGUCUGCACUUAUGCGACCAGGGCUUGGACCAUGAUUAAGAAAUGUAAACAAUCCACAUCAAAAA--AGUGGCUGUUGGUCUGGCCAAGUCGGCAUC .....(((..(((.(((((((((.(((.(((....)))))).)))))..(((((.......(....)...((((..((((........--.)))).))))))))).)))).))).))).. ( -36.60) >DroYak_CAF1 36523 118 + 1 UCGUUUGCGGGACAUGGCACUCUUGUCUGCACUUGUACGACGAGAGCUUGGACCAUGAUUAAGAAAUGUAAACAAUCCACAUCAAAAA--UAAGACUGAUGGUCUGUCCAAAUCGGCAUU ..(((((((.((((((((.(((((((((((....))).))))))))....).))))).))......)))))))......(((((....--......)))))...((((......)))).. ( -29.90) >consensus UCGUUUGCGGGACAUGGCGCUCUUGUCUGCACUUGUACGACAAGAGCUUGGACCAUGAUUAAGAAAUGUAAACAAUCCACAUCAAAAAAAAGUGGCUGAAUGUCCGUCUAAGUCGGCAUC ..(((((((.((((((((((((((((((((....))).)))))))))...).))))).))......))))))).....................(((((.............)))))... (-26.86 = -27.42 + 0.56)
Location | 4,050,648 – 4,050,766 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.15 |
Mean single sequence MFE | -32.76 |
Consensus MFE | -25.92 |
Energy contribution | -26.16 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.10 |
Mean z-score | -1.61 |
Structure conservation index | 0.79 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721302 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4050648 118 - 20766785 GAUGCCGACUUAG--GGACAUUCAGCCACUUUUUUUUGAUGUGGAUUGUUUACAUUUCUUAAUCAUGGUCCAAGCUCUUGUCGUACAAGUGCAGACAAGAGCGCCAUGUCCCGCAAACGA .....((.....(--((((((...((((.........((((((((...)))))))).........))))....((((((((((((....))).)))))))))...))))))).....)). ( -36.87) >DroSec_CAF1 33167 120 - 1 GAUGCCGACUUAGACGGACAUUCAGCCACUUUUUUUUUAUGUAGAUUGUUUACAUUUCUUAAUCAUGGUCCAAGCUCUUGUCGUACAACUGCAGACAAGAGCGCCAUGUCCCGCAAACGA ..((((......)..((((((...((((..........(((((((...)))))))..........))))....((((((((((((....))).)))))))))...)))))).)))..... ( -30.75) >DroSim_CAF1 38067 119 - 1 GAUGCCGACUUAGACGGACAUUCAGCCACUUUU-UUUGAUGUAGAUUGUUUACAUUUCUUAAUCAUGGUCCAAGCUCUUGUCGUACAACUGCAGACAAGAGCGCCAUGUCCCGCAAACGA (((((((.......))).))))..((.......-...((((((((...)))))))).......((((((....((((((((((((....))).)))))))))))))))....))...... ( -31.90) >DroEre_CAF1 32608 118 - 1 GAUGCCGACUUGGCCAGACCAACAGCCACU--UUUUUGAUGUGGAUUGUUUACAUUUCUUAAUCAUGGUCCAAGCCCUGGUCGCAUAAGUGCAGACAAGAGCGCCAUGUCCCGCAAACGA ..(((.(((.((((..(((((((((((((.--........)))).))))................)))))...((.((.((((((....))).))).)).)))))).)))..)))..... ( -33.49) >DroYak_CAF1 36523 118 - 1 AAUGCCGAUUUGGACAGACCAUCAGUCUUA--UUUUUGAUGUGGAUUGUUUACAUUUCUUAAUCAUGGUCCAAGCUCUCGUCGUACAAGUGCAGACAAGAGUGCCAUGUCCCGCAAACGA ..(((.(((.(((((((.((((..(((...--.....))))))).))))))).))).......((((((....(((((.((((((....))).))).)))))))))))....)))..... ( -30.80) >consensus GAUGCCGACUUAGACGGACAUUCAGCCACUUUUUUUUGAUGUGGAUUGUUUACAUUUCUUAAUCAUGGUCCAAGCUCUUGUCGUACAAGUGCAGACAAGAGCGCCAUGUCCCGCAAACGA ..(((................................((((((((...)))))))).......((((((....((((((((((((....))).)))))))))))))))....)))..... (-25.92 = -26.16 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:52 2006