Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,050,328 – 4,050,528 |
Length | 200 |
Max. P | 0.997228 |
Location | 4,050,328 – 4,050,448 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.21 |
Mean single sequence MFE | -45.98 |
Consensus MFE | -39.16 |
Energy contribution | -39.72 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -2.71 |
Structure conservation index | 0.85 |
SVM decision value | 2.82 |
SVM RNA-class probability | 0.997228 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4050328 120 - 20766785 AAAUGAGCGAAUGCAGCGCGGUUGCAUCUGACAAUCAAGUGGUGACGGGGGACGUAACACGCCCCGUGAAUGCCUGAGUGGGUGCCGACAACAAGUUGCAGAGCUGCUCAUUAAAGGCUU .((((((((..((((((...((((((((((....(((.((..(.((((((..((.....)))))))).)..)).))).)))))).)))).....))))))....))))))))........ ( -43.90) >DroSec_CAF1 32849 118 - 1 AAAUGAGCGAAUGCAGCGCGGUUGCAUCUGACAAUCAAGUGGUGACGGGGGACGUAACACGCCCCGUGAAUGCCUGAGUGGGUGCCGACAACAAGUUGCA--GCUGCUCAUUAAAGGCUU .((((((((..((((((...((((((((((....(((.((..(.((((((..((.....)))))))).)..)).))).)))))).)))).....))))))--..))))))))........ ( -45.80) >DroSim_CAF1 37749 118 - 1 AAAUGAGCGAAUGCAGCGCGGUUGCAUCUGACAAUCAAGUGGUGACGGGGGACGUAACACGCCCCGUGAAUGCCUGAGUGGGUGCCGACAACAAGUUGCA--GCUGCUCAUUAAAGGCUU .((((((((..((((((...((((((((((....(((.((..(.((((((..((.....)))))))).)..)).))).)))))).)))).....))))))--..))))))))........ ( -45.80) >DroEre_CAF1 32292 117 - 1 AAAUGAGCGAAUGCAGCGCGGUUGCAUCUGACAAUCAAGUGGUGACGGG-GGCGAAACACGCUCCCUGAAUGCCUGAGUGGUUGCCGACAACAAGUUGCA--GCUGCUCAUUAAAGGCUC .((((((((..((((((...((((..((.(.((((((...(((..((((-((((.....))).)))))...)))....))))))).))))))..))))))--..))))))))........ ( -46.70) >DroYak_CAF1 36205 118 - 1 AAAUGAGCGAAUGCAGCGCGGUUGCAUCUGACAAUCAAGUGGUGACGGGGGGCGGAACACGCUCCGUGAAUGCCUGAGUGGUUGCCGACAACAAGUUGCA--GCUGCUCAUUAAAGGCUU .((((((((..((((((...((((..((.(.((((((...(((..((.((((((.....)))))).))...)))....))))))).))))))..))))))--..))))))))........ ( -47.70) >consensus AAAUGAGCGAAUGCAGCGCGGUUGCAUCUGACAAUCAAGUGGUGACGGGGGACGUAACACGCCCCGUGAAUGCCUGAGUGGGUGCCGACAACAAGUUGCA__GCUGCUCAUUAAAGGCUU .((((((((..((((((...((((((((((....(((.((..(.((((((..((.....)))))))).)..)).))).)))))).)))).....))))))....))))))))........ (-39.16 = -39.72 + 0.56)
Location | 4,050,408 – 4,050,528 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -42.79 |
Consensus MFE | -40.30 |
Energy contribution | -41.34 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.02 |
Mean z-score | -1.82 |
Structure conservation index | 0.94 |
SVM decision value | 2.15 |
SVM RNA-class probability | 0.989089 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4050408 120 + 20766785 ACUUGAUUGUCAGAUGCAACCGCGCUGCAUUCGCUCAUUUCGCAUUCCGCAGUGUUUGUUUGCAUAAACUUGAGCGACAGGCGGGCGGAUUGGGUGGAUGGUUUUGAAUGACAGCGCAGA ....(.((((.....)))).)((((((((((((.(((((((.((.(((((..((((((((.((..........)))))))))).))))).)).).))))))...)))))).))))))... ( -42.60) >DroSec_CAF1 32927 120 + 1 ACUUGAUUGUCAGAUGCAACCGCGCUGCAUUCGCUCAUUUCGCAUUCCGCAGUGUUUGUUUGCAUAAACUUGAGCGACAGGCGGGCGGAUUGGGUGGAUGGUUUUGAAUGACAGCGCGGA ......((((.....))))((((((((((((((.(((((((.((.(((((..((((((((.((..........)))))))))).))))).)).).))))))...)))))).)))))))). ( -47.60) >DroSim_CAF1 37827 120 + 1 ACUUGAUUGUCAGAUGCAACCGCGCUGCAUUCGCUCAUUUCGCAUUCCGCAGUGUUUGUUUGCAUAAACUUGAGCGACAGGCGGGCGGAUUGGGUGGAUGGUUUUGAAUGACAGCGCAGA ....(.((((.....)))).)((((((((((((.(((((((.((.(((((..((((((((.((..........)))))))))).))))).)).).))))))...)))))).))))))... ( -42.60) >DroEre_CAF1 32369 120 + 1 ACUUGAUUGUCAGAUGCAACCGCGCUGCAUUCGCUCAUUUCGCAUUCCACAGUGUUUGUUUGCAUAAACUUGAGCGACAGGCGGACGGAUUGGGUGGAUGGUUUUGAAUGACAGCGCGCA ......((((.....)))).((((((((((((((.......))..(((((...((((((((((.................))))))))))...))))).......))))).))))))).. ( -37.93) >DroYak_CAF1 36283 120 + 1 ACUUGAUUGUCAGAUGCAACCGCGCUGCAUUCGCUCAUUUCGCAUUCCGCAGUGUUUGUUUGCAUAAACUUGAGCGACAGGCGGGCGGAUUGGGUAGAUGGUUUUGAAUGACAGCACGGA ......((((.....))))(((.((((((((((.(((((((.((.(((((..((((((((.((..........)))))))))).))))).)).).))))))...)))))).)))).))). ( -43.20) >consensus ACUUGAUUGUCAGAUGCAACCGCGCUGCAUUCGCUCAUUUCGCAUUCCGCAGUGUUUGUUUGCAUAAACUUGAGCGACAGGCGGGCGGAUUGGGUGGAUGGUUUUGAAUGACAGCGCGGA ......((((.....))))((((((((((((((.(((((((.((.(((((..((((((((.((..........)))))))))).))))).)).).))))))...)))))).)))))))). (-40.30 = -41.34 + 1.04)
Location | 4,050,408 – 4,050,528 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -32.58 |
Consensus MFE | -31.74 |
Energy contribution | -31.26 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.10 |
Mean z-score | -1.38 |
Structure conservation index | 0.97 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899276 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4050408 120 - 20766785 UCUGCGCUGUCAUUCAAAACCAUCCACCCAAUCCGCCCGCCUGUCGCUCAAGUUUAUGCAAACAAACACUGCGGAAUGCGAAAUGAGCGAAUGCAGCGCGGUUGCAUCUGACAAUCAAGU ...((((((.(((((................(((((..((.....))....((((....)))).......)))))..((.......)))))))))))))((((((....).))))).... ( -32.80) >DroSec_CAF1 32927 120 - 1 UCCGCGCUGUCAUUCAAAACCAUCCACCCAAUCCGCCCGCCUGUCGCUCAAGUUUAUGCAAACAAACACUGCGGAAUGCGAAAUGAGCGAAUGCAGCGCGGUUGCAUCUGACAAUCAAGU .((((((((.(((((................(((((..((.....))....((((....)))).......)))))..((.......)))))))))))))))................... ( -33.80) >DroSim_CAF1 37827 120 - 1 UCUGCGCUGUCAUUCAAAACCAUCCACCCAAUCCGCCCGCCUGUCGCUCAAGUUUAUGCAAACAAACACUGCGGAAUGCGAAAUGAGCGAAUGCAGCGCGGUUGCAUCUGACAAUCAAGU ...((((((.(((((................(((((..((.....))....((((....)))).......)))))..((.......)))))))))))))((((((....).))))).... ( -32.80) >DroEre_CAF1 32369 120 - 1 UGCGCGCUGUCAUUCAAAACCAUCCACCCAAUCCGUCCGCCUGUCGCUCAAGUUUAUGCAAACAAACACUGUGGAAUGCGAAAUGAGCGAAUGCAGCGCGGUUGCAUCUGACAAUCAAGU ...((((((.(((((.......(((((...........((.....))....((((....)))).......)))))..((.......)))))))))))))((((((....).))))).... ( -31.60) >DroYak_CAF1 36283 120 - 1 UCCGUGCUGUCAUUCAAAACCAUCUACCCAAUCCGCCCGCCUGUCGCUCAAGUUUAUGCAAACAAACACUGCGGAAUGCGAAAUGAGCGAAUGCAGCGCGGUUGCAUCUGACAAUCAAGU .((((((((.(((((................(((((..((.....))....((((....)))).......)))))..((.......)))))))))))))))................... ( -31.90) >consensus UCCGCGCUGUCAUUCAAAACCAUCCACCCAAUCCGCCCGCCUGUCGCUCAAGUUUAUGCAAACAAACACUGCGGAAUGCGAAAUGAGCGAAUGCAGCGCGGUUGCAUCUGACAAUCAAGU ...((((((.(((((................(((((..((.....))....((((....)))).......)))))..((.......)))))))))))))((((((....).))))).... (-31.74 = -31.26 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:50 2006