Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,049,088 – 4,049,208 |
Length | 120 |
Max. P | 0.958060 |
Location | 4,049,088 – 4,049,208 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.54 |
Mean single sequence MFE | -26.12 |
Consensus MFE | -23.04 |
Energy contribution | -23.86 |
Covariance contribution | 0.82 |
Combinations/Pair | 1.03 |
Mean z-score | -1.63 |
Structure conservation index | 0.88 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.958060 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4049088 120 - 20766785 GAGUCAACUUAAAGUUGAUUAAAUUAGAAAUUUUAUGGCCUCAAAACAAAAUGUCAAAGUUUUUACAACUGCUGGUCUGGGGCGGCAGCCUUGAAAGUUGAUAAAUUGUGGCAGAAAGUA .(((((((.....))))))).........(((((...(((.....((((..((((((..(((......((((((.(....).))))))....)))..))))))..)))))))..))))). ( -28.80) >DroSec_CAF1 31854 120 - 1 GAGUCAACUUAAAGUUGAUUAAAUUAGAAAUUUUAUGGCCUCAAAACAAAAUGUCAAAGUUUUUACAACUGCUGGUCUGGAGCGGCAGCCUUGAAAGUUGAUAAAUUGUGGCAGAAAGUA .(((((((.....))))))).........(((((...(((.....((((..((((((..(((......((((((.(....).))))))....)))..))))))..)))))))..))))). ( -28.30) >DroSim_CAF1 36524 120 - 1 GAGUCAACUUAAAGUUGAUUAAAUUAGAAAUUUUAUGGCCUCAAAACAAAAUGUCAAAGUUUUUACAACUGCUGGUCUGGGGCGGCAGCCUUGAAAGUUGAUAAAUUGUGGCAGAAAGUA .(((((((.....))))))).........(((((...(((.....((((..((((((..(((......((((((.(....).))))))....)))..))))))..)))))))..))))). ( -28.80) >DroEre_CAF1 31042 112 - 1 GAGUCAACUUAAAGUUGAUUAAAUUAGAAAUUUUAUGGCCUCAAAACAAAAUGUCAAAGUUUUUACAACUGCUG--------CGGCAGCCUUGAAACUUGAUAAAUUGUAGCAGAAAGUU .(((((((.....)))))))........((((((...((......((((..((((((.(((((.....((((..--------..))))....)))))))))))..)))).))..)))))) ( -22.70) >DroYak_CAF1 34883 112 - 1 GAGUCAACUUAAAGUUGAUUAAAUUAGAAAUUUUAUAGCCUCAAAACAAAAUGUCAAAGUUUUUACAACGGCUG--------GGGCAGCCUUGAAAGUUGAUAAAUUGUUGCAGAAAGUA .(((((((.....))))))).........(((((...((.....(((((..((((((...((((.(((.(((((--------...))))))))))))))))))..)))))))..))))). ( -22.00) >consensus GAGUCAACUUAAAGUUGAUUAAAUUAGAAAUUUUAUGGCCUCAAAACAAAAUGUCAAAGUUUUUACAACUGCUGGUCUGG_GCGGCAGCCUUGAAAGUUGAUAAAUUGUGGCAGAAAGUA .(((((((.....))))))).........(((((...(((.....((((..((((((..(((......((((((.(....).))))))....)))..))))))..)))))))..))))). (-23.04 = -23.86 + 0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:45 2006