Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,046,045 – 4,046,157 |
Length | 112 |
Max. P | 0.701794 |
Location | 4,046,045 – 4,046,157 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.53 |
Mean single sequence MFE | -47.38 |
Consensus MFE | -36.31 |
Energy contribution | -36.25 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -1.92 |
Structure conservation index | 0.77 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4046045 112 + 20766785 GUGGCAUGUGGCUGGC-------CGCUGGUG-GGCAAUGGCAAAUGGCAGGUGGCUCCGGUGGUCAGCCAAAAUGGAGUGCUGCGCACAAUGGAAUGCCGUGCUAUAAAUAAAGUGCCCG (.(((((.((((((((-------((((((.(-(.((...((.....))...)).))))))))))))))))..((((.((((...)))).((((....)))).)))).......)))))). ( -49.10) >DroSec_CAF1 28691 120 + 1 GUGGCAGGUGGCUGGCGGUCGGCGGCUGGUGGGGCAAUGGCAAAUGGCAGGUGGCUCCGGUGGUCAGCCAAAAUGGAGUGCUGCGCACAAUGGAAUGCCGAGCUAUAAAUAAAGUGCCCG (.((((.((((((((((.((((((((((.((((((..((.(....).))....)))))).))))).)))........((((...))))....)).)))).))))))........))))). ( -46.50) >DroSim_CAF1 33359 120 + 1 GUGGCAGGUGGCUGGCGGUCGGCGGCUGGUGGGGCAAUGGCAAAUGGCAGGUGGCUCCGGUGGUCAGCCAAAAUGGAGUGCUGCGCACAAUGGAAUGCCGAGCUAUAAAUAAAGUGCCCG (.((((.((((((((((.((((((((((.((((((..((.(....).))....)))))).))))).)))........((((...))))....)).)))).))))))........))))). ( -46.50) >DroYak_CAF1 31866 119 + 1 GUGGCUGGCGGCUGGCGGCUGGUGGCUGGUGG-GUGAUGGCAGGUGGCAGGUGGCUCCGGUGGUCAGCCAAAAUGGAGUGCUGCGCACAAUGGAAUGCCGUGCUAUAAAUAAAGUGCCCG ...((..((.((..(...)..)).))..))((-((.((((((.(((((((...((((((.(((....)))...)))))).)))).))).......))))))(((........))))))). ( -47.40) >consensus GUGGCAGGUGGCUGGCGGUCGGCGGCUGGUGGGGCAAUGGCAAAUGGCAGGUGGCUCCGGUGGUCAGCCAAAAUGGAGUGCUGCGCACAAUGGAAUGCCGAGCUAUAAAUAAAGUGCCCG (.(((.....((..((.(....).))..))......(((((.....((((...((((((.(((....)))...)))))).))))(((........)))...))))).........)))). (-36.31 = -36.25 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:33 2006