Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,044,439 – 4,044,559 |
Length | 120 |
Max. P | 0.980566 |
Location | 4,044,439 – 4,044,559 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.33 |
Mean single sequence MFE | -35.72 |
Consensus MFE | -28.68 |
Energy contribution | -31.32 |
Covariance contribution | 2.64 |
Combinations/Pair | 1.03 |
Mean z-score | -2.33 |
Structure conservation index | 0.80 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980566 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4044439 120 + 20766785 GGUGUCUUUAAGCCUGUUAGCUAAAAAGAAGAUAACCACAGUCAUAAUUGAUGAGUGCGAAAAUGGAACACGAAUCGUGGGCCAGCAGAACAUUCGUCUUCUUUCCGGGAGGCUGAUAGC (.((((....(((((.(..(....(((((((((.......((((....))))(((((......(((..((((...))))..)))......)))))))))))))))..).))))))))).) ( -34.90) >DroSec_CAF1 27109 112 + 1 GCUGUCUUUAAGCCUGUUAGCUAAAAAGAAGAUAACCACAGUCAUAAUUGAUGA--------AUGGAACACGAUUCGUGGCCCAGGAGAACAUUCGUCUUCUUUCUGGGAGGCUGAUAGC ((((((....(((((.((((....(((((((((..((...((((....))))..--------.(((..((((...))))..))))).((....))))))))))))))).))))))))))) ( -36.90) >DroSim_CAF1 31774 120 + 1 GCUGUCUUUAAGCCUGUUAGCUAAAAAGAAGAUAACCACAGUCAUAAUUGAUGAGUGCGAAAAUGGAACACGAUUCGUGGCCCAGGAGAACAUUCGUCUUCUUUCUGGGAGGCUGAUAGC ((((((....(((((.((((....(((((((((.......((((....))))(((((......(((..((((...))))..)))......)))))))))))))))))).))))))))))) ( -41.00) >DroEre_CAF1 26563 120 + 1 GUUGUCUUUAAGCCUAUUAAGUAAAAACAAGAUAACCACAGUCUUAAUUGAUGAGUGCGAAAAUGGAACACGAAUCGUGAGCCAGGAGAACAUUCGUCUUCUGUCUGGGAGGCCGAUAGC ((((((.....((((.....((....)).......((.(((.(......((((((((......(((..((((...))))..)))......))))))))....).))))))))).)))))) ( -30.60) >DroYak_CAF1 30384 120 + 1 GUUGUCUUUAAGCCUGUUAGCUAACAACAAGAUAACCACAGUCAUAAUUGAUGAGUGCGAAAAUGGAACACAAAUCGUGGGCCAGCAGAACAUUAGUCUUCCUUCUGGAAGGCUGAUAGC ((((((((..(((......)))......))))))))(.((.((((.....)))).)).)....(((..(((.....)))..))).......(((((((((((....)))))))))))... ( -35.20) >consensus GCUGUCUUUAAGCCUGUUAGCUAAAAAGAAGAUAACCACAGUCAUAAUUGAUGAGUGCGAAAAUGGAACACGAAUCGUGGGCCAGGAGAACAUUCGUCUUCUUUCUGGGAGGCUGAUAGC ((((((....(((((.((((....(((((((((.......((((....))))(((((......(((..(((.....)))..)))......)))))))))))))))))).))))))))))) (-28.68 = -31.32 + 2.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:27 2006