Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,042,359 – 4,042,558 |
Length | 199 |
Max. P | 0.844657 |
Location | 4,042,359 – 4,042,478 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.73 |
Mean single sequence MFE | -31.17 |
Consensus MFE | -17.51 |
Energy contribution | -20.72 |
Covariance contribution | 3.21 |
Combinations/Pair | 1.14 |
Mean z-score | -2.06 |
Structure conservation index | 0.56 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844657 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4042359 119 - 20766785 UUUCCACAUUAAGUUUUCGAGCUUAGUGCCUUGGAAAAGGGUGGAAAAAGGUUUACACUUUCUUGGUCAGACCUUUUUG-GUCAGGUUAAAUAGUUACCCUCGAGAACUAAAGGAAACUC (((((((((((((((....)))))))).((((....)))))))))))..(((((...(((((((((...((((.....)-))).(((.........))).))))))....))).))))). ( -33.70) >DroSec_CAF1 25050 119 - 1 UUUCCACAUUAAGUUUUCGAGCUUAGUGCCUUGGAAAAGGGUGGUAAAAGGUUUCCACUUUCUUGGUCAGACCUUUUUG-GUCAGGUUAAAUAGUUAACCUCGCGAACCAAAGGAAACUC (((((.(((((((((....)))))))))((((....)))).((((((((((((((((......)))..)))))))))..-((.(((((((....))))))).))..))))..)))))... ( -37.60) >DroSim_CAF1 27209 119 - 1 UUUCCACAUUAAGUUUUCGAGCUUAGUGCCUUGGAAAAGGGUGGAAAAAGGUUUCCACUUUAUUGGUCAGACCUUUUUG-GUCAGGUUAAAUAGUUAACCUCGCGAACUAAAGGAAACUC (((((((((((((((....)))))))).((((....)))))))))))..(((((((.............((((.....)-)))(((((((....)))))))...........))))))). ( -39.60) >DroEre_CAF1 24275 118 - 1 UGUCCACAGUAAGUUUUGGAGCUUAGUGC-UUGAAAAAGGAUUGAAAAAGGUAUUCACUUUCUGGGUCAGACCUUUUCGGGUCAGGUUAAAUAGUUGGCCUCGAGAACCAAGGGAAACU- ..(((.((((...((((.((((.....))-)).))))...)))).....(((.(((.............(((((....)))))(((((((....))))))).))).)))...)))....- ( -31.50) >DroYak_CAF1 28270 93 - 1 UGUCCAUCCUAAGUUUUUGAGCUUAGUGCCUUGGUAAAGGAUAGAAAAAGGUUA---------------------------AAAGGUUAAAAAGUUAAAAGUUAGAACUAAACGAAACUC .........(((.(((((((.(((...(((((...............)))))..---------------------------.))).))))))).)))....................... ( -13.46) >consensus UUUCCACAUUAAGUUUUCGAGCUUAGUGCCUUGGAAAAGGGUGGAAAAAGGUUUCCACUUUCUUGGUCAGACCUUUUUG_GUCAGGUUAAAUAGUUAACCUCGAGAACUAAAGGAAACUC (((((((((((((((....)))))))))((((....)))).))))))..(((((((.............(((........)))(((((((....)))))))...........))))))). (-17.51 = -20.72 + 3.21)
Location | 4,042,438 – 4,042,558 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.75 |
Mean single sequence MFE | -30.29 |
Consensus MFE | -24.94 |
Energy contribution | -25.54 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.26 |
Mean z-score | -1.56 |
Structure conservation index | 0.82 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4042438 120 - 20766785 UUUCUUAAUAGCAUUUAUACCCACAUUGGCUUCUAUUAUUGUUACAACUUUUUCCAAAACGAGCAGGCAGAUUAUGUGGGUUUCCACAUUAAGUUUUCGAGCUUAGUGCCUUGGAAAAGG ...(((............((((((((..((((((....(((..(.......)..)))....)).)))).....))))))))((((((((((((((....)))))))))...)))))))). ( -27.20) >DroSec_CAF1 25129 120 - 1 UUUCUUAAUACCAUUUAGGCCCACAUUGGCUUCUGUUAUUGUUACAACUUUCUCUAAAACGAGCAGGCAGAUUAUGUGGGUUUCCACAUUAAGUUUUCGAGCUUAGUGCCUUGGAAAAGG ..........((......((((((((...(((((((..(((((..............)))))))))).))...))))))))((((((((((((((....)))))))))...)))))..)) ( -32.14) >DroSim_CAF1 27288 120 - 1 UUUCUUAAUAGCAUUUAGGCCCACAUUGGCUUCUUUUAUUGUUGAAACUUUCUCCAAAACGAGCAGGCAGAUUAUGUGGGUUUCCACAUUAAGUUUUCGAGCUUAGUGCCUUGGAAAAGG ...(((((......)))))(((((((..(((((((.(.(((..((.....))..))).).))).)))).....)))))))(((((((((((((((....)))))))))...))))))... ( -30.90) >DroEre_CAF1 24354 111 - 1 --------UUGCAUUUAGGCCCACAUUGGCUUCUGUUAUCGUCACCUCCUUCUCCGAGACGAUUAGGCAGAUUAUGUGGGUGUCCACAGUAAGUUUUGGAGCUUAGUGC-UUGAAAAAGG --------..(((((.((((((((((.....((((((((((((..............))))))..))))))..)))))))).((((..........)))).)).)))))-.......... ( -32.34) >DroYak_CAF1 28323 120 - 1 AUUCUUUAUAGUAUUUAUGCCCAUAUUGGCUUCUAAUAUCGUUAAAAUUUUUUUCAAUACGAGUAGGCCGAUUCUGUGGGUGUCCAUCCUAAGUUUUUGAGCUUAGUGCCUUGGUAAAGG ...((((((.(((...((((((((((((((..(((...((((................)))).)))))))))...)))))))).....(((((((....))))))))))....)))))). ( -28.89) >consensus UUUCUUAAUAGCAUUUAGGCCCACAUUGGCUUCUAUUAUUGUUACAACUUUCUCCAAAACGAGCAGGCAGAUUAUGUGGGUUUCCACAUUAAGUUUUCGAGCUUAGUGCCUUGGAAAAGG ................((((((((((...((((((...(((((..............))))).)))).))...))))))))))...(((((((((....)))))))))((((....)))) (-24.94 = -25.54 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:21 2006